Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
730 |
35.1 |
2107516 |
91.4% |
1926269 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,503,704 |
A→G |
intergenic (‑273/‑354) |
insG ← / → yjhB |
KpLE2 phage‑like element; IS4 putative transposase/putative sialic acid transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,503,704 | 0 | A | G | 100.0%
| 62.8
/ NA
| 19 | intergenic (‑273/‑354) | insG/yjhB | KpLE2 phage‑like element; IS4 putative transposase/putative sialic acid transporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (5/14); total (5/14) |
TAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAAT > NC_000913/4503628‑4503775
|
taACAGGTATGAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAGCctc < 1:932840/81‑1 (MQ=255)
cAGGTATGAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAGCctct > 1:932867/1‑79 (MQ=255)
cAGGTATGAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAGCCTCTCa < 2:932841/81‑1 (MQ=255)
ggTATGAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAGCCTCTCAGt < 1:932842/81‑1 (MQ=255)
ataCAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAGCCTCTCAGTCTTTCCTCAtt > 1:932878/1‑81 (MQ=255)
taCAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAGCCTCTCAGTCTTTCCTCAttt < 1:932843/81‑1 (MQ=255)
cAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAGCCTCTCAGTCTTTCCTCATTTg < 1:932844/80‑1 (MQ=255)
aaaGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAGCCTCTCAGTCTTTCCTCATTTGACg > 1:932871/1‑79 (MQ=255)
aaTACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAGCCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTa < 1:932845/81‑1 (MQ=255)
gAAAACAGCTATAACGTAAGCTAAAGTAATAGCCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAAc < 1:932846/81‑1 (MQ=255)
gAAAACAGCTATAACGTAAGCTAAAGTAATAGCCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAAc < 2:932847/81‑1 (MQ=255)
taACGTAAGCTAAAGTAATAGCCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGaa < 2:932848/80‑1 (MQ=255)
taACGTAAGCTAAAGTAATAGCCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGaa < 2:932850/80‑1 (MQ=255)
taACGTAAGCTAAAGTAATAGCCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGaa < 2:932852/80‑1 (MQ=255)
taACGTAAGCTAAAGTAATAGCCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGa < 1:932851/79‑1 (MQ=255)
taACGTAAGCTAAAGTAATAGCCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGa < 2:932849/79‑1 (MQ=255)
aaCGTAAGCTAAAGTAATAGCCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGaaaa > 1:932876/1‑81 (MQ=255)
aCGTAAGCTAAAGTAATAGCCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAAt < 1:932853/81‑1 (MQ=255)
aaaGTAATAGCCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAAt > 2:932885/1‑81 (MQ=255)
|
TAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAAT > NC_000913/4503628‑4503775
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
