Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,999,715 |
G→A |
T59T (ACC→ACT) |
ygeR ← |
LysM domain‑containing putative peptidase lipoprotein YgeR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,999,715 | 0 | G | A | 100.0%
| 110.7
/ NA
| 31 | T59T (ACC→ACT) | ygeR | LysM domain‑containing putative peptidase lipoprotein YgeR |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (12/19); total (12/19) |
ACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAAGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGT > NC_000913/2999637‑2999792
|
acccaGTTTTAGTTTCTGACCAACTTCAATGGTGTAAGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTAGt > 2:490863/1‑81 (MQ=255)
gTTTTAGTTTCTGACCAACTTCAATGGTGTAAGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTAGTTCCCg < 1:490812/81‑1 (MQ=255)
tAGTTTCTGACCAACTTCAATGGTGTAAGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTAGTTCCCgtggt > 2:490866/1‑81 (MQ=255)
gTTTCTGACCAACTTCAATGGTGTAAGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTAGTTCCCgtggtg < 2:490812/80‑1 (MQ=255)
gTTTCTGACCAACTTCAATGGTGTAAGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTAGTTCCCGTGGTgc > 1:490856/1‑81 (MQ=255)
tttCTGACCAACTTCAATGGTGTAAGGGGGGAAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTAGTTCCCGTGGTgcg < 2:490813/81‑1 (MQ=255)
cTTCAATGGTGTAAGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGat < 1:490815/81‑1 (MQ=255)
cAATGGTGTAAGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGatat < 1:490817/80‑1 (MQ=255)
cAATGGTGTAAGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGatat < 2:490815/80‑1 (MQ=255)
aaTGGTGTAAGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGAtata < 2:490817/80‑1 (MQ=255)
aaTGGTGTAAGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGATATAg > 1:490862/1‑81 (MQ=255)
aTGGTGTAAGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGATATAGc < 1:490819/81‑1 (MQ=255)
ggTGTAAGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGATATAGCg > 2:490859/1‑80 (MQ=255)
gtgtAAGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGATATAGCGTa > 2:490862/1‑81 (MQ=255)
gtAAGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGATATAGCGTATc > 2:490860/1‑81 (MQ=255)
tAAGGGGGGGAAATGCCGTTCAGTCGCGCCGGTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGATATAGCGTATc < 2:490819/80‑1 (MQ=255)
aaTGCCGTTCAGTCGCGCCAGTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCAc < 2:490820/81‑1 (MQ=255)
gTTCAGTCGCGCCAGTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTa < 2:490821/81‑1 (MQ=255)
ttCAGTCGCGCCAGTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTa > 2:490868/1‑80 (MQ=255)
cAGTCGCGCCAGTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTaaa < 2:490822/80‑1 (MQ=255)
gTCGCGCCAGTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACgg < 2:490823/81‑1 (MQ=255)
gcCAGTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCg < 1:490825/81‑1 (MQ=255)
cAGTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCgg > 2:490864/1‑80 (MQ=255)
cAGTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCgg > 2:490874/1‑80 (MQ=255)
gTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCGGaa > 2:490877/1‑80 (MQ=255)
gTTCTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCGGAAt < 1:490826/81‑1 (MQ=255)
cTTTTACGCTAGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCGGAATACg > 2:490869/1‑81 (MQ=255)
ttACGCTAGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCGGAATACg < 2:490827/78‑1 (MQ=255)
ttACGCTAGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCGGAATACg < 1:490827/78‑1 (MQ=255)
aCGCTAGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCGGAATACGTTcc < 2:490828/80‑1 (MQ=255)
gCTAGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGt < 2:490829/81‑1 (MQ=255)
|
ACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTAAGGGGGGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTGT > NC_000913/2999637‑2999792
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
