Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,006,049 |
(A)7→6 |
intergenic (‑263/‑213) |
ygeV ← / → ygeW |
putative sigma(54)‑dependent transcriptional regulator YgeV/putative carbamoyltransferase YgeW |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,006,043 | 0 | A | . | 100.0%
| 63.6
/ NA
| 16 | intergenic (‑257/‑219) | ygeV/ygeW | putative sigma(54)‑dependent transcriptional regulator YgeV/putative carbamoyltransferase YgeW |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (11/5); total (11/5) |
GAGTTTATCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGCAGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCGTATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAAC > NC_000913/3005966‑3006106
|
aaGTTTATCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGCAGCAAATAAATAACGCGATaaa > 1:492111/2‑80 (MQ=255)
aGTTTATCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGCAGCAAATAAATAACGCGATaaaa < 2:492093/80‑1 (MQ=255)
ttATCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGCAGCAAATAAATAACGCGATaaaaaagc > 2:492112/1‑79 (MQ=255)
aaaCTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGCAGCAAATAAATAACGCGAT‑AAAAAAGCCaaa < 1:492095/80‑1 (MQ=255)
aaCTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGCAGCAAATAAATAACGCGAT‑AAAAAAGCCAAACg > 2:492113/1‑81 (MQ=255)
aaGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGCAGCAAATAAATAACGCGAT‑AAAAAAGCCAAACGTTTTc < 1:492096/81‑1 (MQ=255)
gagagaTAGCCTGCCCCTTTATCTTATTTCTGATACTTAGCAGCAAATAAATAACGCGAT‑AAAAAAGCCAAACGTTTTCGt < 1:492097/81‑1 (MQ=255)
gaTAGCCTGCCCCTTTATCTTATTTCTGATACTTAGCAGCAAATAAATAACGCGAT‑AAAAAAGCCAAACGTTTTCGTAttt > 1:492112/1‑81 (MQ=255)
gCCTGCCCCTTTATCTTATTTCTGATACTTAGCAGCAAATAAATAACGCGAT‑AAAAAAGCCAAACGTTTTCGTATTTTaca < 2:492097/81‑1 (MQ=255)
ccTGCCCCTTTATCTTATTTCTGATACTTAGCAGCAAATAAATAACGCGAT‑AAAAAAGCCAAACGTTTTCGTATTTTaca > 2:492116/1‑80 (MQ=255)
ccTTTATCTTATTTCTGATACTTAGCAGCAAATAAATAACGCGAT‑AAAAAAGCCAAACGTTTTCGTATTTTACAaacaac > 1:492123/1‑80 (MQ=255)
aTCTTATTTCTGATACTTAGCAGCAAATAAATAACGCGAT‑AAAAAAGCCAAACGTTTTCGTATTTTACAAACAACCAGAAg > 1:492131/1‑81 (MQ=255)
aTCTTATTTCTGATACTTAGCAGCAAATAAATAACGCGAT‑AAAAAAGCCAAACGTTTTCGTATTTTACAAACAACCAGAAg > 1:492120/1‑81 (MQ=255)
tCTTATTTCTGATACTTAGCAGCAAATAAATAACGCGAT‑AAAAAAGCCAAACGTTTTCGTATTTTACAAACAACCAGAAGc > 2:492135/1‑81 (MQ=255)
ttATTTCTGATACTTAGCAGCAAATAAATAACGCGAT‑AAAAAAGCCAAACGTTTTCGTATTTTACAAACAACCAGAAGCTg > 2:492126/1‑81 (MQ=255)
aTTTCTGATACTTAGCAGCAAATAAATAACGCGAT‑AAAAAAGCCAAACGTTTTCGTATTTTACAAACAACCAGAAGCt < 1:492099/78‑1 (MQ=255)
tCTGATACTTAGCAGCAAATAAATAACGCGAT‑AAAAAAGCCAAACGTTTTCGTATTTTACAAACAACCAGAAGCTGGCAt > 1:492115/1‑80 (MQ=255)
gATACTTAGCAGCAAATAAATAACGCGAT‑AAAAAAGCCAAACGTTTTCGTATTTTACAAACAACCAGAAGCTGGCATCAAt > 2:492118/1‑81 (MQ=255)
gcaAATAAATAACGCGAT‑AAAAAAGCCAAACGTTTTCGTATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAAc > 2:492120/1‑81 (MQ=255)
|
GAGTTTATCAAACTGAAGAGAGATAGCCTGCCCCTTTATCTTATTTCTGATACTTAGCAGCAAATAAATAACGCGATAAAAAAAGCCAAACGTTTTCGTATTTTACAAACAACCAGAAGCTGGCATCAATTTGTGATCAAC > NC_000913/3005966‑3006106
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
