Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,014,976 |
C→T |
A28T (GCT→ACT) |
yqeC ← |
uncharacterized protein YqeC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,014,976 | 0 | C | T | 100.0%
| 113.0
/ NA
| 33 | A28T (GCT→ACT) | yqeC | uncharacterized protein YqeC |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (19/14); total (19/14) |
TCGTCGTGATTAACACACGCCTGCCGCTAGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGCACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTAT > NC_000913/3014898‑3015048
|
tcgtcgtGATTAACACACGCCTGCCGCTAGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTAc < 1:493934/81‑1 (MQ=255)
cgtcgtGATTAACACACGCCTGCCGCTAGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTAc > 2:493978/1‑80 (MQ=255)
gtcgtGATTAACACACGCCTGCCGCTAGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTAcc < 1:493935/80‑1 (MQ=255)
tGATTAACACACGCCTGCCGCTAGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTACcaacaa > 2:493970/1‑81 (MQ=255)
acacGCCTGCCGCTAGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAAt > 2:493984/1‑80 (MQ=255)
acacGCCTGCCGCTAGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAAt > 2:493974/1‑80 (MQ=255)
acacGCCTGCCGCTAGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAAt > 1:493982/1‑80 (MQ=255)
gCCGCTAGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTgg > 2:493983/1‑80 (MQ=255)
gCCGCTAGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTgg > 1:493991/1‑80 (MQ=255)
cGCTAGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGAc < 1:493937/81‑1 (MQ=255)
cGCTAGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGAc < 2:493935/81‑1 (MQ=255)
cTAGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGt > 1:493988/1‑81 (MQ=255)
aGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGttt > 2:493975/1‑81 (MQ=255)
aGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGttt > 1:493986/1‑81 (MQ=255)
gCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCAc < 2:493937/81‑1 (MQ=255)
gCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCAc < 1:493939/81‑1 (MQ=255)
aGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCt < 1:493940/81‑1 (MQ=255)
ttCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTTGGACGTTTCTGCGCACCTa > 2:493977/1‑80 (MQ=255)
tCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTaaa > 2:493993/1‑81 (MQ=255)
cTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAAt > 2:493976/1‑81 (MQ=255)
tGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAAt > 2:493973/1‑80 (MQ=255)
ccagccaAAAAAGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCaa > 2:493979/1‑81 (MQ=255)
aaaaaaGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACt > 1:493981/1‑80 (MQ=255)
aaaaGCAAGCTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAAt > 2:493982/1‑81 (MQ=255)
agcaagcTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGcc < 1:493941/81‑1 (MQ=255)
agcaagcTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGcc > 1:493967/1‑81 (MQ=255)
gcaagcTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCg < 2:493941/81‑1 (MQ=255)
gcTGGTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATgg < 2:493942/81‑1 (MQ=255)
gTTTTCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTc < 1:493944/80‑1 (MQ=255)
ttCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAAc < 1:493945/80‑1 (MQ=255)
tCCCCCCAGTACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACt < 1:493946/80‑1 (MQ=255)
ccccccAGTACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACta > 2:493988/1‑80 (MQ=255)
cccccAGTACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACtat < 2:493946/80‑1 (MQ=255)
|
TCGTCGTGATTAACACACGCCTGCCGCTAGCCTGGAGCAGTTCTGCCAGCCAAAAAAGCAAGCTGGTTTTCCCCCCAGCACCAACAACAGAAATCACAGTGGGACGTTTCTGCGCACCTAAATCAATGACTAATGCCGATGGGTCAACTAT > NC_000913/3014898‑3015048
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
