Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,107,146 |
T→C |
Q670Q (CAA→CAG) |
speC ← |
ornithine decarboxylase, biosynthetic |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,107,146 | 0 | T | C | 100.0%
| 78.9
/ NA
| 24 | Q670Q (CAA→CAG) | speC | ornithine decarboxylase, biosynthetic |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (14/10); total (14/10) |
TCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGTTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCAACGCCCCTTCTGCCG > NC_000913/3107069‑3107222
|
tCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTg > 2:513863/1‑80 (MQ=255)
tataAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCg > 1:513890/1‑81 (MQ=255)
taAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGcc < 2:513825/81‑1 (MQ=255)
acCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGccccacc < 1:513827/81‑1 (MQ=255)
cAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGAc > 1:513870/1‑81 (MQ=255)
aGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACt > 1:513860/1‑81 (MQ=255)
cTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTc > 2:513857/1‑81 (MQ=255)
gCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCgg < 2:513827/81‑1 (MQ=255)
gCGAAAATCCCGGCAACAAATACACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCAgg > 2:513864/1‑81 (MQ=255)
aaaaTCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTa > 1:513871/1‑81 (MQ=255)
ggCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCaa < 1:513829/81‑1 (MQ=255)
aacaaATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCaacg > 2:513875/1‑78 (MQ=255)
aaTTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGc < 2:513829/81‑1 (MQ=255)
aTTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGcc < 1:513831/81‑1 (MQ=255)
aCCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAgg < 1:513832/80‑1 (MQ=255)
aCCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGt > 1:513867/1‑81 (MQ=255)
ttcCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAgg > 1:513891/1‑81 (MQ=255)
cAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCaa > 1:513886/1‑81 (MQ=255)
tGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCAACGc < 2:513832/81‑1 (MQ=255)
cAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCAACGccc < 2:513833/81‑1 (MQ=255)
ggAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCAACGCCCCtt < 2:513834/81‑1 (MQ=255)
aaCGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCAACGCCCCTTCTGCCg > 2:513871/1‑81 (MQ=255)
aaCGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCAACGCCCCTTCTGCCg > 2:513873/1‑81 (MQ=255)
aCGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCAACGCCCCTTCTGCCg > 1:513878/1‑80 (MQ=255)
|
TCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGTTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCAACGCCCCTTCTGCCG > NC_000913/3107069‑3107222
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
