Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
730 |
35.1 |
2107516 |
91.4% |
1926269 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,107,146 |
T→C |
Q670Q (CAA→CAG) |
speC ← |
ornithine decarboxylase, biosynthetic |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,107,146 | 0 | T | C | 100.0%
| 104.0
/ NA
| 31 | Q670Q (CAA→CAG) | speC | ornithine decarboxylase, biosynthetic |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (22/9); total (22/9) |
CTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGTTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCAACGCCCCTTCTGCCG > NC_000913/3107072‑3107222
|
cTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAAcc < 2:572601/81‑1 (MQ=255)
ataAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGc > 2:572658/1‑81 (MQ=255)
aaCACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGccc > 2:572644/1‑80 (MQ=255)
cacCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGccccac > 2:572643/1‑81 (MQ=255)
gCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGa > 1:572652/1‑81 (MQ=255)
cAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGAc > 1:572654/1‑81 (MQ=255)
tCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTcc > 1:572655/1‑81 (MQ=255)
ccGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTccc > 2:572666/1‑81 (MQ=255)
gCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCgg > 2:572640/1‑81 (MQ=255)
gAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCggg > 2:572646/1‑80 (MQ=255)
gAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCggg > 2:572634/1‑80 (MQ=255)
aaaTCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTAc < 2:572602/81‑1 (MQ=255)
cGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGc > 1:572631/1‑80 (MQ=255)
ggCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCa > 1:572642/1‑80 (MQ=255)
caaATTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCAc < 2:572603/81‑1 (MQ=255)
aaTTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGc > 1:572650/1‑81 (MQ=255)
aTTCACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGcc < 1:572604/81‑1 (MQ=255)
cACCCCTTCTTCCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAg < 2:572605/80‑1 (MQ=255)
ttcttcCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGAt > 2:572665/1‑80 (MQ=255)
cttcCAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAg > 1:572663/1‑81 (MQ=255)
ccAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGc > 2:572662/1‑80 (MQ=255)
ccAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGc > 2:572668/1‑80 (MQ=255)
cAGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCaa < 2:572606/81‑1 (MQ=255)
aGTGCAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCAAc > 2:572664/1‑81 (MQ=255)
cAAGGAAATAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCAACGccc > 1:572669/1‑81 (MQ=255)
aaaTAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCAACGCCCCTTCt < 1:572607/81‑1 (MQ=255)
aaTAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCAACGCCCCTTCTg > 1:572649/1‑81 (MQ=255)
aaTAACGCTGAACCGCCCCAACCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCAACGCCCCTTCTg < 2:572608/81‑1 (MQ=255)
tAACGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCAACGCCCCTTCTGcc > 2:572648/1‑81 (MQ=255)
aCGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCAACGCCCCTTCTGCCg > 2:572657/1‑80 (MQ=255)
aCGCTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCAACGCCCCTTCTGCCg < 2:572609/80‑1 (MQ=255)
|
CTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGTTGAACCGCCCCACCCCAGACTTCCCCGGGTACCACGCAAAGCACGCCAGGTGGATAAGGCAACGCCCCTTCTGCCG > NC_000913/3107072‑3107222
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
