Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,134,388 |
T→C |
I86I (ATT→ATC) |
yghT → |
putative ATP‑binding protein YghT |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,134,388 | 0 | T | C | 100.0%
| 168.6
/ NA
| 48 | I86I (ATT→ATC) | yghT | putative ATP‑binding protein YghT |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (34/14); total (34/14) |
CTTACATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATTACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAAC > NC_000913/3134313‑3134465
|
cTTACATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGc > 1:519718/1‑81 (MQ=255)
tACATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGt > 2:519714/1‑81 (MQ=255)
aCATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCg < 1:519684/79‑1 (MQ=255)
aaaaCAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTc > 1:519731/1‑81 (MQ=255)
aaaCAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTc < 2:519685/80‑1 (MQ=255)
aaaCAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTc < 2:519684/80‑1 (MQ=255)
aaaCAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCg > 2:519726/1‑81 (MQ=255)
cAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGccc < 1:519687/81‑1 (MQ=255)
cAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGccc > 1:519749/1‑81 (MQ=255)
gAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTAc < 1:519688/81‑1 (MQ=255)
aaaTCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACt < 2:519688/81‑1 (MQ=255)
aaaTCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACt < 2:519689/81‑1 (MQ=255)
aTCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTgc > 2:519729/1‑81 (MQ=255)
aTCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTgc > 1:519721/1‑81 (MQ=255)
cAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTgcgc > 1:519725/1‑81 (MQ=255)
cAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTgcgc > 1:519738/1‑81 (MQ=255)
tGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTc > 1:519770/1‑81 (MQ=255)
tGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTc < 2:519690/81‑1 (MQ=255)
gAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCg > 1:519740/1‑81 (MQ=255)
aaaCAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGt > 2:519719/1‑80 (MQ=255)
aaaCAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTc < 1:519692/81‑1 (MQ=255)
aGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCatat > 1:519735/1‑81 (MQ=255)
gCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATg > 1:519745/1‑81 (MQ=255)
aaaaaaaTTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCt < 2:519692/81‑1 (MQ=255)
aaTTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCt > 2:519747/1‑81 (MQ=255)
aTTGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTg > 1:519726/1‑81 (MQ=255)
ttGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTgt > 1:519723/1‑81 (MQ=255)
tGCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTgtc > 2:519735/1‑81 (MQ=255)
gCCTGGACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTgtc < 2:519693/80‑1 (MQ=255)
gACCAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTgtcgtcgtc > 2:519741/1‑81 (MQ=255)
cAGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTcgcg > 1:519755/1‑81 (MQ=255)
aGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCCTTCGTCATATGCTTGCCTGTCGTCGTCGCgg > 2:519743/1‑81 (MQ=255)
aGTTCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCCTTCGTCATATGCTTGCCTGTCGTCGTCGCgg > 2:519721/1‑81 (MQ=255)
tCCGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGt > 1:519739/1‑80 (MQ=255)
ccGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGtt > 2:519745/1‑80 (MQ=255)
cGGCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTaa > 1:519751/1‑81 (MQ=255)
ggCGCTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAAt > 2:519736/1‑81 (MQ=255)
cgcTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTg > 2:519728/1‑81 (MQ=255)
cgcTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTg > 1:519732/1‑81 (MQ=255)
gcTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGt > 2:519733/1‑81 (MQ=255)
cTGGTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGtt > 2:519727/1‑81 (MQ=255)
ggTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTc > 2:519751/1‑80 (MQ=255)
gTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCt < 1:519697/80‑1 (MQ=255)
gTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCt < 2:519695/80‑1 (MQ=255)
gTAATCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCt < 1:519695/80‑1 (MQ=255)
aaTCACAGCGTTTGTCGTCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAac > 1:519760/1‑81 (MQ=255)
aaTCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAac > 2:519740/1‑81 (MQ=255)
aaTCACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAac > 2:519757/1‑81 (MQ=255)
|
CTTACATAAAACAATTGAACGAAATCAGGTGAAAACAGCAAAAAAATTGCCTGGACCAGTTCCGGCGCTGGTAATTACAGCGTTTGTCGCCCGTCGCTTACTGCGCTTTCGTCATATGCTTGCCTGTCGTCGTCGCGGGTTAATTGTTCTAAC > NC_000913/3134313‑3134465
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
