Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,207,553 |
C→T |
P61P (CCC→CCT) |
ttdB → |
L(+)‑tartrate dehydratase subunit beta |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,207,553 | 0 | C | T | 100.0%
| 141.8
/ NA
| 39 | P61P (CCC→CCT) | ttdB | L(+)‑tartrate dehydratase subunit beta |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (15/24); total (15/24) |
GTCACCGCCGTTTGATCGAACTGAAACGTCCGATCCCTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCCATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAACCAGTATGCGTATGGAA > NC_000913/3207477‑3207622
|
gTCACCGCCGTTTGATCGAACTGAAACGTCCGATCCCTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATc < 2:535718/80‑1 (MQ=255)
cgccgTTTGATCGAACTGAAACGTCCGATCCCTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTgcg > 2:535779/1‑80 (MQ=255)
gccgTTTGATCGAACTGAAACGTCCGATCCCTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCa < 1:535722/81‑1 (MQ=255)
gccgTTTGATCGAACTGAAACGTCCGATCCCTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCa < 2:535719/81‑1 (MQ=255)
gccgTTTGATCGAACTGAAACGTCCGATCCCTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCa < 1:535721/81‑1 (MQ=255)
cgTTTGATCGAACTGAAACGTCCGATCCCTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCaaa < 1:535723/81‑1 (MQ=255)
cgTTTGATCGAACTGAAACGTCCGATCCCTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCaa > 2:535775/1‑80 (MQ=255)
gATCGAACTGAAACGTCCGATCCCTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACgg > 1:535769/1‑81 (MQ=255)
gATCGAACTGAAACGTCCGATCCCTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACg < 2:535723/80‑1 (MQ=255)
aTCGAACTGAAACGTCCGATCCCTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGc > 1:535784/1‑81 (MQ=255)
cTGAAACGTCCGATCCCTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACaaa > 1:535783/1‑81 (MQ=255)
aaaCGTCCGATCCCTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATg < 2:535724/80‑1 (MQ=255)
cGATCCCTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATgg < 1:535726/81‑1 (MQ=255)
cGATCCCTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATg < 1:535727/80‑1 (MQ=255)
tCCCTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGtct > 2:535790/1‑81 (MQ=255)
tCCCTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGtct > 2:535773/1‑81 (MQ=255)
cTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCg < 1:535728/81‑1 (MQ=255)
aCGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTc < 2:535729/80‑1 (MQ=255)
aCGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTc < 2:535728/80‑1 (MQ=255)
aTCTCAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGcc > 1:535775/1‑81 (MQ=255)
ctcAACGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGccc > 2:535777/1‑80 (MQ=255)
aaCGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACa < 1:535731/81‑1 (MQ=255)
cGGCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAAc < 1:535732/81‑1 (MQ=255)
ggCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAAcc < 1:535733/81‑1 (MQ=255)
ggCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAAc > 1:535792/1‑80 (MQ=255)
ggCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAAc > 2:535784/1‑80 (MQ=255)
gCAAAGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAACCa < 1:535734/81‑1 (MQ=255)
aaaGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAACCAg > 2:535781/1‑80 (MQ=255)
aGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAACCAGTAt > 1:535777/1‑81 (MQ=255)
aGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAACCAGTAt < 2:535734/81‑1 (MQ=255)
aGCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAACCAGTAt < 1:535736/81‑1 (MQ=255)
gCGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAACCAGTATg < 1:535737/81‑1 (MQ=255)
cGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAACCAGTATGc > 2:535794/1‑81 (MQ=255)
cGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAACCAGTATGc > 2:535792/1‑81 (MQ=255)
cGATTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAACCAGTATGc < 1:535738/81‑1 (MQ=255)
aTTTTCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAACCAGTATGCGt < 1:535739/81‑1 (MQ=255)
ttCCACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAACCAGTATGCGTAt < 1:535740/80‑1 (MQ=255)
ccACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAACCAGTATGCGTATgg < 2:535740/80‑1 (MQ=255)
cACGCTGGCCCTATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAACCAGTATGCGTATGGaa < 1:535742/81‑1 (MQ=255)
|
GTCACCGCCGTTTGATCGAACTGAAACGTCCGATCCCTTACGATCTCAACGGCAAAGCGATTTTCCACGCTGGCCCCATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAACCAGTATGCGTATGGAA > NC_000913/3207477‑3207622
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
