Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,283,066 |
Δ1 bp |
coding (1091/1155 nt) |
agaS → |
putative galactosamine‑6‑phosphate deaminase/isomerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,283,063 | 0 | C | . | 100.0%
| 107.9
/ NA
| 26 | coding (1088/1155 nt) | agaS | putative galactosamine‑6‑phosphate deaminase/isomerase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (14/12); total (14/12) |
GAGCAGGCATTTTGCTTCCTGATGTACGCCCAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATACCCCATCAGCCAGTGGCACCGTTAACCGCGTGGTGCAAGGCGTAATCATTCATCCGTGGCAGGCATAAGAGGATCG > NC_000913/3282984‑3283138
|
gAGCAGGCATTTTGCTTCCTGATGTACGCCCAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATAcc > 2:552740/1‑81 (MQ=255)
gAGCAGGCATTTTGCTTCCTGATGTACGCCCAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATAcc > 1:552737/1‑81 (MQ=255)
aGGCATTTTGCTTCCTGATGTACGCCCAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATAcccat > 1:552739/1‑78 (MQ=255)
ggCATTTTGCTTCCTGATGTACGCCCAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATAcccat > 2:552730/1‑77 (MQ=255)
aTTTTGCTTCCTGATGTACGCCCAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGc > 2:552746/1‑80 (MQ=255)
aTTTTGCTTCCTGATGTACGCCCAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGc > 1:552754/1‑80 (MQ=255)
ttGCTTCCTGATGTACGCCCAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAg < 2:552695/80‑1 (MQ=255)
ccTGATGTACGCCCAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCAcc > 2:552742/1‑81 (MQ=255)
cTGATGTACGCCCAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCAcc < 1:552697/80‑1 (MQ=255)
aTGTACGCCCAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGt < 2:552698/79‑1 (MQ=255)
aTGTACGCCCAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGTTa < 1:552698/81‑1 (MQ=255)
tGTACGCCCAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGTTaa > 2:552754/1‑81 (MQ=255)
gTACGCCCAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGTTAAc > 2:552752/1‑81 (MQ=255)
gTACGCCCAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGTTAAc > 1:610732/1‑81 (MQ=255)
gCCCAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGTTAACcgcg > 2:552734/1‑81 (MQ=255)
cAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGTTAACCGCgtgg > 1:552758/1‑81 (MQ=255)
cAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGTTAACCGCgtgg < 2:552699/81‑1 (MQ=255)
gACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGTTAACCGCgtggtg < 1:552701/81‑1 (MQ=255)
ttGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGTTAACCGCGTGGTGCAAgg > 1:552762/1‑81 (MQ=255)
gCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGTTAACCGCGTGGTGCAAGGc < 1:552702/80‑1 (MQ=255)
cTGATGCAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGTTAACCGCGTGGTGCAAGGCGTaa < 1:552703/81‑1 (MQ=255)
gCAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGTTAACCGCGTGGTGCAAGGCGTAAtcatt > 2:552735/1‑81 (MQ=255)
cAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGTTAACCGCGTGGTGCAAGGCGTAAtcattc < 1:552705/81‑1 (MQ=255)
cAGTCGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGTTAACCGCGTGGTGCAAGGCGTAAtcatt < 2:552703/80‑1 (MQ=255)
cGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGTTAACCGCGTGGTGCAAGGCGTAATCATTCATcc > 2:552744/1‑81 (MQ=255)
cGCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGTTAACCGCGTGGTGCAAGGCGTAATCATTCATcc > 1:552770/1‑81 (MQ=255)
gCTGCACATGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGTTAACCGCGTGGTGCAAGGCGTAATCATTCATCCg > 1:552744/1‑81 (MQ=255)
cacaTGGGCAATACGCCGGATA‑CCCATCAGCCAGTGGCACCGTTAACCGCGTGGTGCAAGGCGTAATCATTCATCCGTggc < 2:552705/81‑1 (MQ=255)
gCCGGATA‑CCCATCAGCCAGTGGCACCGTTAACCGCGTGGTGCAAGGCGTAATCATTCATCCGTGGCAGGCATAAGAGGAt < 2:552706/81‑1 (MQ=255)
ggATA‑CCCATCAGCCAGTGGCACCGTTAACCGCGTGGTGCAAGGCGTAATCATTCATCCGTGGCAGGCATAAGAGGATCg > 1:552761/1‑80 (MQ=255)
|
GAGCAGGCATTTTGCTTCCTGATGTACGCCCAGACGTTTGCACTGATGCAGTCGCTGCACATGGGCAATACGCCGGATACCCCATCAGCCAGTGGCACCGTTAACCGCGTGGTGCAAGGCGTAATCATTCATCCGTGGCAGGCATAAGAGGATCG > NC_000913/3282984‑3283138
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
