Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,302,238 |
C→A |
L252I (CTC→ATC) |
yhbU → |
putative peptidase YhbU |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,302,238 | 0 | C | A | 100.0%
| 163.7
/ NA
| 45 | L252I (CTC→ATC) | yhbU | putative peptidase YhbU |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (15/30); total (15/30) |
GGTTATCCGACGCTATGTAAAGGGCGTTATCTGGTGGACGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTCTCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTCGGTGAAAATTGAAGGCCGCCAGCGTAG > NC_000913/3302163‑3302314
|
ggTTATCCGACGCTATGTAAAGGGCGTTATCTGGTGGACGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCaa > 1:556986/1‑80 (MQ=255)
gTTATCCGACGCTATGTAAAGGGCGTTATCTGGTGGACGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATa > 1:556988/1‑81 (MQ=255)
aTCCGACGCTATGTAAAGGGCGTTATCTGGTGGACGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATAccc > 2:556981/1‑81 (MQ=255)
aTCCGACGCTATGTAAAGGGCGTTATCTGGTGGACGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATAccc > 2:556978/1‑81 (MQ=255)
tCCGACGCTATGTAAAGGGCGTTATCTGGTGAACGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCt < 2:556920/81‑1 (MQ=255)
cGACGCTATGTAAAGGGCGTTATCTGGTGGACGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTgg < 1:556923/81‑1 (MQ=255)
cGACGCTATGTAAAGGGCGTTATCTGGTGGACGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTgg < 1:556922/81‑1 (MQ=255)
gACGCTATGTAAAGGGCGTTATCTGGTGGACGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGa < 2:556925/81‑1 (MQ=255)
gACGCTATGTAAAGGGCGTTATCTGGTGGACGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGa < 1:556925/81‑1 (MQ=255)
gACGCTATGTAAAGGGCGTTATCTGGTGGACAGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGa < 2:556923/81‑1 (MQ=255)
tGTAAAGGGCGTTATCTGGTGGACGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAActgct < 2:556927/80‑1 (MQ=255)
tGTAAAGGGCGTTATCTGGTGGACGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAActgc < 2:556926/79‑1 (MQ=255)
gTAAAGGGCGTTATCTGGTGGACGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAACtgctgc > 2:556988/1‑81 (MQ=255)
tAAAGGGCGTTATCTGGTGGACGGCGAGCGCTATCACGCGCTGGAAGAACCGACCAGTATCAATACCCTGGAACTGCTGcc < 1:556929/81‑1 (MQ=255)
tAAAGGGCGTTATCTGGTGGACGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGcc < 1:556930/81‑1 (MQ=255)
aaGGGCGTTATCTGGTGGACGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGCCgg < 2:556930/81‑1 (MQ=255)
aaGGGCGTTATCTGGTGGACGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGCCgg < 1:556932/81‑1 (MQ=255)
gTTATCTGGTGGACGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTaa > 2:556972/1‑81 (MQ=255)
aCGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAata > 2:556984/1‑81 (MQ=255)
aCGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAata < 1:556933/81‑1 (MQ=255)
cGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAatat > 2:556977/1‑81 (MQ=255)
cGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAatat < 2:556933/81‑1 (MQ=255)
gCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTg > 2:557002/1‑81 (MQ=255)
cGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGc < 1:556935/81‑1 (MQ=255)
cGAGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGc < 2:556935/81‑1 (MQ=255)
aGCGCTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCtt < 1:556937/81‑1 (MQ=255)
gcgcTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTc < 1:556938/81‑1 (MQ=255)
cgcTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAGCTGCTGCCGGAGTTAATAGCGGCGAATATTGCTTCg < 2:556938/81‑1 (MQ=255)
cgcTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTCg > 1:556991/1‑81 (MQ=255)
cTATCACGCGCTGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTCGGt < 1:556940/81‑1 (MQ=255)
tATCACGCGCTGGAAGAACCAACCAGTATCAATACTCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGTTTCGGt > 2:556994/1‑80 (MQ=255)
cgcgCTGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTCGGTGAAAAt < 1:556941/81‑1 (MQ=255)
gcgcTGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTCGGTGAAAAtt > 1:556987/1‑81 (MQ=255)
gcTGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTCGGTGAAAATTg > 2:556989/1‑80 (MQ=255)
tGGAAGAACCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTCGGTGAAAATTGAAg > 1:557002/1‑81 (MQ=255)
gaagaaCCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTCGGTGAAAATTGAAGgc < 2:556941/81‑1 (MQ=255)
aagaaCCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTCGGTGAAAATTGAAGgcc < 2:556942/81‑1 (MQ=255)
agaaCCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTCGGTGAAAATTGAAGgccg < 1:556944/81‑1 (MQ=255)
gaaCCAACCAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTCGGTGAAAATTGAAGgccgc > 2:556991/1‑81 (MQ=255)
aaccaaccAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTCGGTGAAAATTGAAGgccgcc < 2:556946/81‑1 (MQ=255)
aaccaaccAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTCGGTGAAAATTGAAGgccgcc < 1:556946/81‑1 (MQ=255)
aaccaaccAGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTCGGTGAAAATTGAAGgccgcc < 1:556945/81‑1 (MQ=255)
aaccaGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTCGGTGAAAATTGAAGGCCGCCAGCg < 2:556947/81‑1 (MQ=255)
accaGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTCGGTGAAAATTGAAGGCCGCCAGCGt < 2:556948/81‑1 (MQ=255)
caGTATCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTCGGTGAAAATTGAAGGCCGCCAGCGTAg < 2:556949/81‑1 (MQ=255)
|
GGTTATCCGACGCTATGTAAAGGGCGTTATCTGGTGGACGGCGAGCGCTATCACGCGCTGGAAGAACCAACCAGTCTCAATACCCTGGAACTGCTGCCGGAGTTAATGGCGGCGAATATTGCTTCGGTGAAAATTGAAGGCCGCCAGCGTAG > NC_000913/3302163‑3302314
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
