Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,302,518 |
Δ1 bp |
coding (30/879 nt) |
yhbV → |
putative peptidase YhbV |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,302,517 | 0 | G | . | 100.0%
| 160.9
/ NA
| 38 | coding (29/879 nt) | yhbV | putative peptidase YhbV |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (23/15); total (23/15) |
CACGCAAACCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGT > NC_000913/3302438‑3302593
|
cACGCAAACCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCtgtg > 2:557056/1‑80 (MQ=255)
gCAAACCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCtgtgtact > 1:557059/1‑77 (MQ=255)
gCAAACCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCtgtgtact > 1:557041/1‑77 (MQ=255)
aCCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGcc < 1:556998/81‑1 (MQ=255)
aCCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGc > 2:557039/1‑80 (MQ=255)
cACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCa > 2:557035/1‑80 (MQ=255)
gcgcATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGAc < 1:556999/80‑1 (MQ=255)
gcgcATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACg > 1:557043/1‑81 (MQ=255)
cgcATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGc > 2:557047/1‑81 (MQ=255)
tatCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGga < 2:556999/81‑1 (MQ=255)
aaTGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTAt > 1:557047/1‑81 (MQ=255)
aaTGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTAt < 1:557001/81‑1 (MQ=255)
aTGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTAt > 1:557054/1‑80 (MQ=255)
tGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTAt > 2:557050/1‑79 (MQ=255)
ggCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATcag > 1:557050/1‑81 (MQ=255)
gCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATcagc < 2:557001/81‑1 (MQ=255)
aGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATcagcag < 1:557003/81‑1 (MQ=255)
aaaaGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGgccgc > 2:557055/1‑80 (MQ=255)
aaaaGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGgccgc > 1:557064/1‑80 (MQ=255)
aGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGccacc < 1:557004/81‑1 (MQ=255)
aaTGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACcagc < 1:557005/81‑1 (MQ=255)
tGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACcagcag > 1:557060/1‑81 (MQ=255)
gAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCagcagc > 1:557055/1‑81 (MQ=255)
atatTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGcc < 2:557005/81‑1 (MQ=255)
atatTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGcc > 2:557033/1‑81 (MQ=255)
atTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGa > 2:557062/1‑81 (MQ=255)
ttCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGAc < 1:557007/81‑1 (MQ=255)
ccTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACg < 1:557008/80‑1 (MQ=255)
ccTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGt > 1:557075/1‑81 (MQ=255)
ccTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGt > 1:557053/1‑81 (MQ=255)
cTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGt > 1:557029/1‑80 (MQ=255)
cTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGt < 1:557009/80‑1 (MQ=255)
ttAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGa > 2:557051/1‑81 (MQ=255)
aGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGAtt > 2:557068/1‑81 (MQ=255)
gggCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGAttt < 1:557010/81‑1 (MQ=255)
ggCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTa < 1:557011/81‑1 (MQ=255)
gCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTAt > 2:557070/1‑81 (MQ=255)
aGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCtt < 2:557011/81‑1 (MQ=255)
aGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCtt > 1:557074/1‑81 (MQ=255)
aGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCtt > 2:557069/1‑81 (MQ=255)
gCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGt > 1:557061/1‑81 (MQ=255)
|
CACGCAAACCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGT > NC_000913/3302438‑3302593
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
