Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
730 |
35.1 |
2107516 |
91.4% |
1926269 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,302,518 |
Δ1 bp |
coding (30/879 nt) |
yhbV → |
putative peptidase YhbV |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,302,517 | 0 | G | . | 100.0%
| 155.0
/ NA
| 37 | coding (29/879 nt) | yhbV | putative peptidase YhbV |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (23/14); total (23/14) |
CGCAAACCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGT > NC_000913/3302440‑3302593
|
cGCAAACCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCtgtgtac < 1:619601/81‑4 (MQ=255)
cAAACCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTg < 2:619602/81‑1 (MQ=255)
aCCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGc > 1:619637/1‑80 (MQ=255)
ccACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCa < 1:619603/81‑1 (MQ=255)
ctctTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCaa > 1:619644/1‑79 (MQ=255)
tGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAgaga > 2:619640/1‑81 (MQ=255)
tGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAgaga > 2:619659/1‑81 (MQ=255)
gcgcATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACg > 2:619664/1‑81 (MQ=255)
gcgcATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACg > 2:619639/1‑81 (MQ=255)
gcgcATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACg > 2:619662/1‑81 (MQ=255)
gcATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCt > 1:619638/1‑81 (MQ=255)
atCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTgg > 2:619641/1‑79 (MQ=255)
tCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGgaag < 1:619604/81‑1 (MQ=255)
aaaTGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTa > 1:619650/1‑81 (MQ=255)
aTGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATc < 1:619605/81‑1 (MQ=255)
aTGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATc < 2:619606/81‑1 (MQ=255)
tGGCAGTGAGAAAAGCAATGAAATATTCCTTTGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTAt > 1:619636/1‑79 (MQ=255)
gTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAgg < 1:619607/81‑1 (MQ=255)
gagaAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGgcc > 2:619651/1‑81 (MQ=255)
gagaAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGgcc > 1:619657/1‑81 (MQ=255)
aaaaGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGgccgc > 2:619656/1‑80 (MQ=255)
aaaGCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGcca < 2:619608/81‑1 (MQ=255)
gCAATGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGccac > 1:619703/1‑79 (MQ=255)
aaTGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACcag > 1:619642/1‑80 (MQ=255)
tGAAATATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACcagcag > 2:619646/1‑81 (MQ=255)
aaaTATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAgcg > 2:619660/1‑81 (MQ=255)
aaaTATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAgcg < 1:619609/81‑1 (MQ=255)
aaTATTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAgcgc > 1:619653/1‑81 (MQ=255)
atatTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGcc < 2:619610/81‑1 (MQ=255)
atatTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGcc < 2:619612/81‑1 (MQ=255)
atatTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGcc < 1:619613/81‑1 (MQ=255)
atatTCCTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGcc < 1:619611/81‑1 (MQ=255)
ccTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGt > 1:619649/1‑81 (MQ=255)
ccTTAGGGCCAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGt > 2:619645/1‑81 (MQ=255)
ccAGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATc < 1:619614/81‑1 (MQ=255)
aGTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCtt < 2:619615/81‑1 (MQ=255)
gTGCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTg > 2:619658/1‑81 (MQ=255)
gCTGT‑GTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGt > 2:619648/1‑81 (MQ=255)
|
CGCAAACCACTCTTGGCGCATATCACCGTAAATGGCAGTGAGAAAAGCAATGAAATATTCCTTAGGGCCAGTGCTGTGGTACTGGCCAAAAGAGACGCTGGAAGAATTTTATCAGCAGGCCGCCACCAGCAGCGCCGACGTGATTTATCTTGGT > NC_000913/3302440‑3302593
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
