Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,485,644 |
C→T |
G59R (GGG→AGG) |
yhfA ← |
OsmC family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,485,644 | 0 | C | T | 100.0%
| 110.1
/ NA
| 31 | G59R (GGG→AGG) | yhfA | OsmC family protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (7/24); total (7/24) |
TGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCTTTTTGCAGGATCGAAACCACATCGATGGCACTGCAACCACCCGCCGCCATCAACACCATTTCCATCGGACTTGGTG > NC_000913/3485566‑3485721
|
tgtgCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCttt < 1:600246/81‑1 (MQ=255)
tgtgCGT‑AACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCtttt < 2:600246/81‑1 (MQ=255)
gtgCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCtttt > 2:600325/1‑81 (MQ=255)
cGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCtttttt < 2:600247/80‑1 (MQ=255)
gTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTg > 2:600306/1‑80 (MQ=255)
aaCAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAgg < 1:600249/81‑1 (MQ=255)
aCAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGa < 2:600249/81‑1 (MQ=255)
cAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGAt < 2:600250/81‑1 (MQ=255)
aGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATc < 1:600252/81‑1 (MQ=255)
cGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGaa < 1:600253/81‑1 (MQ=255)
gtggtgCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGaaa > 2:600299/1‑81 (MQ=255)
tggtgCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAAc < 2:600253/81‑1 (MQ=255)
ccTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACcaca < 2:600254/80‑1 (MQ=255)
ctctTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATc < 1:600256/81‑1 (MQ=255)
ctctTCGCGGCGTTCAGAGGTCAATTTTACTACACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATc < 2:600256/81‑1 (MQ=255)
ttCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATCg < 2:600257/79‑1 (MQ=255)
ttCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATCGAt > 1:600301/1‑81 (MQ=255)
tCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATCGATg > 2:600298/1‑81 (MQ=255)
cgcgGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATCGATg < 1:600259/80‑1 (MQ=255)
ttCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATCGATGGCACTGCa < 2:600259/81‑1 (MQ=255)
tCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATCGATGGCACTGCaa > 2:600313/1‑81 (MQ=255)
gTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATCGATGGCACTGCAACCAccc < 2:600260/81‑1 (MQ=255)
gTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATCGATGGCACTGCAACCAccc < 1:600263/81‑1 (MQ=255)
gTCAATTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATCGATGGCACTGCAACCAccc < 1:600262/81‑1 (MQ=255)
aaTTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATCGATGGCACTGCAACCACccgcc < 1:600264/81‑1 (MQ=255)
aTTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATCGATGGCACTGCAACCACccgccg < 2:600264/81‑1 (MQ=255)
aTTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATCGATGGCACTGCAACCACccgccg < 1:600266/81‑1 (MQ=255)
aTTTTACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATCGATGGCACTGCAACCACccgccg > 2:600311/1‑81 (MQ=255)
ttACTTCACAATCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATCGATGGCACTGCAACCACCCgccgcc < 2:600266/80‑1 (MQ=255)
aTCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATCGATGGCACTGCAACCACCCGCCGCCATCAACACCAt < 2:600268/81‑1 (MQ=255)
aTCGACCACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATCGATGGAACTGCAACCACCCGCCGCCATCAACACCAt < 2:600267/81‑1 (MQ=255)
ccACATCCTGACGCCTTTTTTGCAGGATCGAAACCACATCGATGGCACTGCAACCACCCGCCGCCATCAACACCATTTCCa > 1:600313/1‑81 (MQ=255)
aTCCTGACGCCTTTTTTGCAGGATCGAAACCACATCGATGGCACTGCAACCACCCGCCGCCATCAACACCATTTCCATCgg < 1:600270/81‑1 (MQ=255)
aCGCCTTTTTTGCAGGATCGAAACCACATCGATGGCACTGCAACCACCCGCCGCCATCAACACCATTTCCATCGGACtt < 1:600271/79‑1 (MQ=255)
gCCTTTTTTGCAGGATCGAAACCACATCGATGGCACTGCAACCACCCGCCGCCATCAACACCATTTCCATCGGACTTGGTg < 1:600272/81‑1 (MQ=255)
|
TGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCTTTTTGCAGGATCGAAACCACATCGATGGCACTGCAACCACCCGCCGCCATCAACACCATTTCCATCGGACTTGGTG > NC_000913/3485566‑3485721
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
