Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,586,933 |
A→T |
intergenic (‑110/‑10) |
ggt ← / → yhhA |
glutathione hydrolase proenzyme/DUF2756 domain‑containing protein YhhA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,586,933 | 0 | A | T | 100.0%
| 103.7
/ NA
| 29 | intergenic (‑110/‑10) | ggt/yhhA | glutathione hydrolase proenzyme/DUF2756 domain‑containing protein YhhA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (12/17); total (12/17) |
CTAAGCCTGGTATATAACTCTGAATTAATCATCGTTTTGTCGGGAAGCGAGTAAACTTAAAGGATATCTTCAGAGGAGGATACGCGATGAAACGACTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATA > NC_000913/3586857‑3587006
|
cTAAGCCTGGTATATAACTCTGAATTAATCATCGTTTTGTCGGGAAGCGAGTAAACTTAAAGGATATCTTCAGAGGTGGAt < 2:625793/81‑1 (MQ=255)
aaGCCTGGTATATAACTCTGAATTAATCATCGTTTTGTCGGGAAGCGAGTAAACTTAAAGGATATCTTCAGAGGTGGATAc > 1:625829/1‑81 (MQ=255)
aGCCTGGTATATAACTCTGAATTAATCATCGTTTTGTCGGAAAGCGAGTAAACTTAAAGGATATCTTCAGAGGTGGATAc < 2:625794/80‑1 (MQ=255)
ccTGGTATATAACTCTGAATTAATCATCGTTTTGTCGGGAAGCGAGTAAACTTAAAGGATATCTTCAGAGGTGGATAcgc > 1:625841/1‑80 (MQ=255)
atataACTCTGAATTAATCATCGTTTTGTCGGGAAGCGAGTAAACTTAAAGGATATCTTCAGAGGTGGATACGCGATGaaa > 1:625838/1‑81 (MQ=255)
ataACTCTGAATTAATCATCGTTTTGTCGGGAAGCGAGTAAACTTAAAGGATATCTTCAGAGGTGGATACGCGATGAAAc > 2:625831/1‑80 (MQ=255)
taACTCTGAATTAATCATCGTTTTGTCGGGAAGCGAGTAAACTTAAAGGATATCTTCAGAGGTGGATACGCGATGAAACg < 2:625795/80‑1 (MQ=255)
aCTCTGAATTAATCATCGTTTTGTCGGGAAGCGAGTAAACTTAAAGGATATCTTCAGAGGTGGATACGCGATGAAACGACt < 1:625798/81‑1 (MQ=255)
aCTCTGAATTAATCATCGTTTTGTCGGGAAGCGAGTAAACTTAAAGGATATCTTCAGAGGTGGATACGCGATGAAACGACt < 1:625797/81‑1 (MQ=255)
ctctGAATTAATCATCGTTTTGTCGGGAAGCGAGTAAACTTAAAGGATATCTTCAGAGGTGGATACGCGATGAAACGACta > 2:625839/1‑80 (MQ=255)
aaTTAATCATCGTTTTGTCGGGAAGCGAGTAAACTTAAAGGATATCTTCAGAGGTGGATACGCGATGAAACGACTTCt < 1:625799/78‑1 (MQ=255)
aaTTAATCATCGTTTTGTCGGGAAGCGAGTAAACTTAAAGGATATCTTCAGAGGTGGATACGCGATGAAACGACTTCTGAt < 2:625799/81‑1 (MQ=255)
aTTAATCATCGTTTTGTCGGGAAGCGAGTAAACTTAAAGGATATCTTCAGAGGTGGATACGCGATGAAACGACTTCTGAtt < 2:625800/81‑1 (MQ=255)
aaTCATCGTTTTGTCGGGAAGCGAGTAAACTTAAAGGATATCTTCAGAGGTGGATACGCGATGAAACGACTTCTGATTCt < 2:625801/80‑1 (MQ=255)
atcatcGTTTTGTCGGGAAGCGAGTAAACTTGAAGGATATCTTCAGAGGTGGATACGCGATGAAACGACTTCTGATTCTTa < 2:625802/81‑1 (MQ=255)
atcatcGTTTTGTCGGGAAGCGAGTAAACTTAAAGGATATCTTCAGAGGTGGATACGCGATGAAACGACTTCTGATTCtt < 2:625803/80‑1 (MQ=255)
tcatcGTTTTGTCGGGAAGCGAGTAAACTTAAAGGATATCTTCAGAGGTGGATACGCGATGAAACGACTTCTGATTCTTAc > 1:625833/1‑81 (MQ=255)
gAAGCGAGTAAACTTAAAGGATATCTTCAGAGGTGGATACGCGATGAAACGACTTCTGATTCTTACGGCACTCCTGCCGtt < 1:625805/81‑1 (MQ=255)
aaGCGAGTAAACTTAAAGGATATCTTCAGAGGTGGATACGCGATGAAACGACTTCTGATTCTTACGGCACTCCTGCCGttt > 2:625858/1‑81 (MQ=255)
gTAAACTTAAAGGATATCTTCAGAGGTGGATACGCGATGAAACGACTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGc < 1:625806/81‑1 (MQ=255)
gTAAACTTAAAGGATATCTTCAGAGGTGGATACGCGATGAAACGACTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGc > 2:625838/1‑81 (MQ=255)
aaCTTAAAGGATATCTTCAGAGGTGGATACGCGATGAAACGACTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCttt < 1:625807/81‑1 (MQ=255)
ggATATCTTCAGAGGTGGATACGCGATGAAACGACTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGcc > 1:625843/1‑81 (MQ=255)
ggATATCTTCAGAGGTGGATACGCGATGAAACGACTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGcc < 1:625808/81‑1 (MQ=255)
gATATCTTCAGAGGTGGATACGCGATGAAACGACTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGccc < 2:625808/81‑1 (MQ=255)
atCTTCAGAGGTGGATACGCGATGAAACGACTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCAt > 1:625860/1‑80 (MQ=255)
atCTTCAGAGGTGGATACGCGATGAAACGACTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCAt > 1:625844/1‑80 (MQ=255)
tCAGAGGTGGATACGCGATGAAACGACTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATa > 2:625845/1‑81 (MQ=255)
cAGAGGTGGATACGCGATGAAACGACTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTaa < 2:625809/78‑1 (MQ=255)
|
CTAAGCCTGGTATATAACTCTGAATTAATCATCGTTTTGTCGGGAAGCGAGTAAACTTAAAGGATATCTTCAGAGGAGGATACGCGATGAAACGACTTCTGATTCTTACGGCACTCCTGCCGTTTGTCGGCTTTGCACAGCCCATTAATA > NC_000913/3586857‑3587006
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
