Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,453,747 |
G→A |
V55V (GTG→GTA) |
yjfF → |
galactofuranose ABC transporter putative membrane subunit YjtF |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,453,747 | 0 | G | A | 100.0%
| 146.4
/ NA
| 40 | V55V (GTG→GTA) | yjfF | galactofuranose ABC transporter putative membrane subunit YjtF |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (24/16); total (24/16) |
TGCTTCCACAAGAGTGATCTGCAATATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTGATCCTCTCAGGTGGGATCGATCTCTCCGTCGGTTCGGTGATCGCCTTTACTGGCGTGTTTCTGGCAA > NC_000913/4453669‑4453814
|
tGCTTCCACAAGAGTGATCTGCAATATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAAt > 1:851271/1‑81 (MQ=255)
gCTTCCACAAGAGTGATCTGCAATATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAAt < 2:851217/80‑1 (MQ=255)
ttCCACAAGAGTGATCTGCAATATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCct > 1:851260/1‑81 (MQ=255)
ccACAAGAGTGATCTGCAATATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCctct > 2:851275/1‑81 (MQ=255)
ccACAAGAGTGATCTGCAATATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCctct > 2:851289/1‑81 (MQ=255)
caAGAGTGATCTGCAATATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAg > 2:851279/1‑81 (MQ=255)
caAGAGTGATCTGCAATATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAg > 1:851275/1‑81 (MQ=255)
gagTGATCTGCAATATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTg > 2:851283/1‑81 (MQ=255)
gagTGATCTGCAATATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTg > 2:851293/1‑81 (MQ=255)
gATCTGCAATATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGgat > 2:851277/1‑81 (MQ=255)
gATCTGCAATATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGgat > 2:851267/1‑81 (MQ=255)
aTCTGCAATATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGgat < 1:851219/80‑1 (MQ=255)
tCTGCAATATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGgatc > 1:851266/1‑80 (MQ=255)
gCAATATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGgatcgatc > 1:851220/1‑81 (MQ=255)
cAATATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGAtct < 1:851221/81‑1 (MQ=255)
cAATATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGAtct > 2:851263/1‑81 (MQ=255)
aaTATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGAtctc < 1:851222/81‑1 (MQ=255)
cTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGt < 1:851223/80‑1 (MQ=255)
gACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGtcgg > 1:851270/1‑81 (MQ=255)
gACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGtcgg > 1:851289/1‑81 (MQ=255)
aCCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGtcgg < 2:851223/80‑1 (MQ=255)
ccGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGtcggtt < 1:851226/81‑1 (MQ=255)
ccGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGtcggtt < 2:851224/81‑1 (MQ=255)
cGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGtcggttc < 1:851227/81‑1 (MQ=255)
cGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGtcggttc > 2:851272/1‑81 (MQ=255)
gATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGtcggttcg < 2:851227/81‑1 (MQ=255)
aaTGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGtcggttcggt > 1:851261/1‑80 (MQ=255)
tCTTGGGATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGTCGGTTCGGTGATCGCCtt > 1:851309/1‑81 (MQ=255)
ggATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGTCGGTTCGGTGATCGCCTTTACTg < 1:851229/81‑1 (MQ=255)
ggATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGTCGGTTCGGTGATCGCCTTTACTg < 1:851230/81‑1 (MQ=255)
gATCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGTCGGTTCGGTGATCGCCTTTACTgg > 1:851269/1‑81 (MQ=255)
aTCATTGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGTCGGTTCGGTGATCGCCTTTACTGGc > 2:851287/1‑81 (MQ=255)
ttGCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGTCGGTTCGGTGATCGCCTTTACTGGCgtgt > 2:851302/1‑81 (MQ=255)
gCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGTCGGTTCGGTGATCGCCTTTACTGGCGTGtt < 2:851230/80‑1 (MQ=255)
gCCGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGTCGGTTCGGTGATCGCCTTTACTGGCGTGtt < 1:851232/80‑1 (MQ=255)
ccGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGTCGGTTCGGTGATCGCCTTTACTGGCGTGTTTc > 1:851306/1‑81 (MQ=255)
ccGTTGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGTCGGTTCGGTGATCGCCTTTACTGGCGTGTTTc < 1:851233/81‑1 (MQ=255)
ttGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGTCGGTTCGGTGATCGCCTTTACTGGCGTGTTTCTgg < 1:851234/81‑1 (MQ=255)
tGGCATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGTCGGTTCGGTGATCGCCTTTACTGGCGTGTTTCTgg > 2:851290/1‑80 (MQ=255)
cATGACCTTTGTAATCCTCTCAGGTGGGATCGATCTCTCCGTCGGTTCGGTGATCGCCTTTACTGGCGTGTTTCTGGCaa > 2:851286/1‑80 (MQ=255)
|
TGCTTCCACAAGAGTGATCTGCAATATCCTGACCGATAATGCCTTTCTTGGGATCATTGCCGTTGGCATGACCTTTGTGATCCTCTCAGGTGGGATCGATCTCTCCGTCGGTTCGGTGATCGCCTTTACTGGCGTGTTTCTGGCAA > NC_000913/4453669‑4453814
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
