Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,502,703 |
G→A |
I243I (ATC→ATT) |
insG ← |
KpLE2 phage‑like element; IS4 putative transposase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,502,703 | 0 | G | A | 100.0%
| 110.4
/ NA
| 32 | I243I (ATC→ATT) | insG | KpLE2 phage‑like element; IS4 putative transposase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (15/17); total (15/17) |
CAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTGCGCTCCCTTTCTGAGAGGTATCATCCAGTGGCGGTGTTCTCCCGCCAGGCTCCAGGCATT > NC_000913/4502628‑4502777
|
cAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAAtctc < 2:862458/81‑1 (MQ=255)
aGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATctct > 2:862494/1‑81 (MQ=255)
tCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTc < 1:862460/81‑1 (MQ=255)
cccGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCa > 1:862512/1‑81 (MQ=255)
ccGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCa > 2:862516/1‑80 (MQ=255)
cGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCata < 2:862460/81‑1 (MQ=255)
ggCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCatct < 1:862463/81‑3 (MQ=255)
ggCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCatat > 2:862502/1‑81 (MQ=255)
ggCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCatat < 1:862462/81‑1 (MQ=255)
aCTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCATATTgcg > 1:862508/1‑81 (MQ=255)
ttCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCATATTGCGCTccc < 1:862464/80‑1 (MQ=255)
tCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCATATTGCGCTCCCt < 2:862464/80‑1 (MQ=255)
gTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCATATTGCGCTCCCTTTc > 1:862505/1‑81 (MQ=255)
ccTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCATATTGCGCTCCCTTTCTg < 2:862465/80‑1 (MQ=255)
tGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCATATTGCGCTCCCTTTCTga > 2:862518/1‑79 (MQ=255)
tGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCATATTGCGCTCCCTTTCTga > 1:862510/1‑79 (MQ=255)
tGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCCAATCTCTTCATATTGCGCTCCCTTTCTga > 2:862528/1‑79 (MQ=255)
ggCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCATATTGCGCTCCCTTTCTGAGAGGTa > 1:862526/1‑81 (MQ=255)
gTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCATATTGCGCTCCCTTTCTGAGAGGTatcatc > 1:862524/1‑81 (MQ=255)
gTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCATATTGCGCTCCCTTTCTGAGAGGTatcat < 1:862467/80‑1 (MQ=255)
ttCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCATATTGCGCTCCCTTTCTGAGAGGTATCATCCAg > 2:862515/1‑81 (MQ=255)
cAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCATATTGCGCTCCCTTTCTGAGAGGTATCATCCAGt < 1:862468/80‑1 (MQ=255)
gCTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCATATTGCGCTCCCTTTCTGAGAGGTATCATCCAGTGGc < 2:862468/81‑1 (MQ=255)
cTTCACCAGATGATCGCCTTTACCCAGTTTTCTAATCTCTTCATATTGCGCTCCCTTTCTGAGAGGTATCATCCAGTGGCg < 2:862469/81‑1 (MQ=255)
atgatCGCCTTTACCCAGTTTTCTAATCTCTTCATATTGCGCTCCCTTTCTGAGAGGTATCATCCAGTGGCGGTGTTCTcc > 1:862531/1‑81 (MQ=255)
tgatCGCCTTTACCCAGTTTTCTAATCTCTTCATATTGCGCTCCCTTTCTGAGAGGTATCATCCAGTGGCGGTGTTCTccc < 1:862471/81‑1 (MQ=255)
gCCTTTACCCAGTTTTCTAATCTCTTCATATTGCGCTCCCTTTCTGAGAGGTATCATCCAGTGGCGGTGTTCTCCCGCCa < 1:862472/80‑1 (MQ=255)
ttACCCAGTTTTCTAATCTCTTCATATTGCGCTCCCTTTCTGAGAGGTATCATCCAGTGGCGGTGTTCTCCCGCCAGGCTc > 1:862518/1‑81 (MQ=255)
cccAGTTTTCTAATCTCTTCATATTGCGCTCCCTTTCTGAGAGGTATCATCCAGTGGCGGTGTTCTCCCGCCAGGCTCCa < 2:862473/80‑1 (MQ=255)
cccAGTTTTCTAATCTCTTCATATTGCGCTCCCTTTCTGAGAGGTATCATCCAGTGGCGGTGTTCTCCCGCCAGGCTCCAg < 1:862473/81‑1 (MQ=255)
cAGTTTTCTAATCTCTTCATATTGCGCTCCCTTTCTGAGAGGTATCATCCAGTGGCGGTGTTCTCCCGCCAGGCTCCAGGc < 1:862475/81‑1 (MQ=255)
ttttCTAATCTCTTCATATTGCGCTCCCTTTCTGAGAGGTATCATCCAGTGGCGGTGTTCTCCCGCCAGGCTCCAGGCAtt > 2:862522/1‑81 (MQ=255)
|
CAGTCCCGGCCACTTTTTTCGTGCCTGCGGGCTGGTTTTCAGCTTCACCAGATGATCGCCTTTACCCAGTTTTCTGATCTCTTCATATTGCGCTCCCTTTCTGAGAGGTATCATCCAGTGGCGGTGTTCTCCCGCCAGGCTCCAGGCATT > NC_000913/4502628‑4502777
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
