Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,513,132 |
G→A |
V106M (GTG→ATG) |
ydcT → |
putative ABC transporter ATP‑binding protein YdcT |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,513,132 | 0 | G | A | 100.0%
| 100.5
/ NA
| 29 | V106M (GTG→ATG) | ydcT | putative ABC transporter ATP‑binding protein YdcT |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (17/12); total (17/12) |
GTCTTTCAGGACTACGCGCTATTTCCGCATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCGTGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGTTTGTACATCAACGTA > NC_000913/1513057‑1513207
|
gTCTTTCAGGACTACGCGCTATTTCCGCATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGaa > 1:266310/1‑80 (MQ=255)
tCTTTCAGGACTACGCGCTATTTCCGCATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAAt > 2:266311/1‑80 (MQ=255)
tCAGGACTACGCGCTATTTCCGCATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATaaa > 2:266309/1‑79 (MQ=255)
tCAGGACTACGCGCTATTTCCGCATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATaa < 2:266265/78‑1 (MQ=255)
gcgcTATTTCCGCATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCAc < 1:266267/81‑1 (MQ=255)
gcgcTATTTCCGCATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCAc < 1:266266/81‑1 (MQ=255)
gcgcTATTTCCGCATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCAc > 1:266301/1‑81 (MQ=255)
cgcTATTTCCGCATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACg < 1:266268/81‑1 (MQ=255)
aTTTCCGCATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAAt > 2:266300/1‑81 (MQ=255)
cGCATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGgcg > 1:266299/1‑80 (MQ=255)
cATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCaa < 1:266269/81‑1 (MQ=255)
atatGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAag < 2:266270/81‑1 (MQ=255)
tGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAgg > 1:266293/1‑81 (MQ=255)
cGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGgcgc > 2:266298/1‑81 (MQ=255)
gATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCt > 1:266304/1‑81 (MQ=255)
cAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGt < 1:266271/81‑1 (MQ=255)
aTGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTgg > 1:266307/1‑81 (MQ=255)
aTGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTgg > 2:266305/1‑81 (MQ=255)
aTGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTgg < 2:266272/81‑1 (MQ=255)
gCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGtt < 1:266273/80‑1 (MQ=255)
aTGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGt > 2:266325/1‑81 (MQ=255)
aTGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGt > 1:266315/1‑81 (MQ=255)
tGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGtt < 1:266274/81‑1 (MQ=255)
gggCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGttt > 1:266308/1‑81 (MQ=255)
tGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGTTTGTACAt > 2:266320/1‑80 (MQ=255)
cAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGTTTGTACATCAACg > 1:266322/1‑81 (MQ=255)
cAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGTTTGTACATCAACg > 2:266306/1‑81 (MQ=255)
aaaGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGTTTGTACATCAACg < 2:266275/80‑1 (MQ=255)
aaGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCTCTGGAGAAAGTGGCGTTGGGGTTTGTACATCAACGTa < 2:266276/81‑1 (MQ=255)
|
GTCTTTCAGGACTACGCGCTATTTCCGCATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCGTGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGTTTGTACATCAACGTA > NC_000913/1513057‑1513207
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
