Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,513,132 |
G→A |
V106M (GTG→ATG) |
ydcT → |
putative ABC transporter ATP‑binding protein YdcT |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,513,132 | 0 | G | A | 100.0%
| 85.7
/ NA
| 24 | V106M (GTG→ATG) | ydcT | putative ABC transporter ATP‑binding protein YdcT |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (17/7); total (17/7) |
GTCTTTCAGGACTACGCGCTATTTCCGCATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCGTGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGTTTGTACATCAACGT > NC_000913/1513057‑1513206
|
gTCTTTCAGGACTACGCGCTATTTCCGCATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGaa > 1:286919/1‑80 (MQ=255)
tCTTTCAGGACTACGCGCTATTTCCGCATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAAt < 1:286896/80‑1 (MQ=255)
ggACTACGCGCTATTTCCGCATATGTAGATTCTTGACAATGTCGCTTATGGGCTGATGGTCAAAGGCATGAATAAAAag > 2:286926/1‑79 (MQ=255)
cgcgCTATTTCCGCATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGc < 2:286897/80‑1 (MQ=255)
tCCGCATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGgc > 1:286922/1‑81 (MQ=255)
cATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGgcgc > 1:286944/1‑79 (MQ=255)
cATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCaa < 2:286898/81‑1 (MQ=255)
atGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAagag > 1:286942/1‑81 (MQ=255)
tCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGgcg > 1:286939/1‑81 (MQ=255)
gATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCt > 2:286929/1‑81 (MQ=255)
gATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCt < 2:286899/81‑1 (MQ=255)
aTTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTg > 1:286918/1‑81 (MQ=255)
gACAATGTCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGgaga > 2:286924/1‑79 (MQ=255)
tCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGt < 1:286900/81‑1 (MQ=255)
tCGCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGt > 1:286932/1‑81 (MQ=255)
gCCTATGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGtt < 1:286901/80‑1 (MQ=255)
aTGGGCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGt > 2:286928/1‑81 (MQ=255)
ggCTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGTTTg > 2:286940/1‑81 (MQ=255)
cTGATGGTCAAAGGCATGAATAAAAAGCAGCGGCGCGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGTTTGTa > 2:286938/1‑81 (MQ=255)
tGATGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGTTTGTa > 2:286943/1‑80 (MQ=255)
aTGGTCAAAGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGTTTGTAc < 1:286902/79‑1 (MQ=255)
aaaGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGTTTGTACATCAACg > 1:286920/1‑80 (MQ=255)
aaGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGTTTGTACATCAACGt > 2:286930/1‑80 (MQ=255)
aaGGCATGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGTTTGTACATCAACGt > 2:286931/1‑80 (MQ=255)
|
GTCTTTCAGGACTACGCGCTATTTCCGCATATGTCGATTCTTGACAATGTCGCCTATGGGCTGATGGTCAAAGGCGTGAATAAAAAGCAGCGGCACGCAATGGCGCAAGAGGCGCTGGAGAAAGTGGCGTTGGGGTTTGTACATCAACGT > NC_000913/1513057‑1513206
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
