Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,158,945 |
T→C |
V187A (GTC→GCC) |
mdtC → |
multidrug efflux pump RND permease subunit MdtC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,158,945 | 0 | T | C | 100.0%
| 150.6
/ NA
| 42 | V187A (GTC→GCC) | mdtC | multidrug efflux pump RND permease subunit MdtC |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (25/17); total (25/17) |
GGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAAC > NC_000913/2158871‑2159021
|
ggCTCCGACGATTTCGCAAATCGACGGTGTTGGTGCTGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCt > 1:367101/1‑81 (MQ=255)
ggCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCt > 2:367107/1‑81 (MQ=255)
cTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGa < 2:367059/81‑1 (MQ=255)
tCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGaa > 2:367114/1‑81 (MQ=255)
ccGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAAt > 1:367096/1‑81 (MQ=255)
gacgaTTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATcc > 2:367098/1‑81 (MQ=255)
gacgaTTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATcc > 2:367109/1‑81 (MQ=255)
acgaTTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCg < 2:367061/81‑1 (MQ=255)
acgaTTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCg < 1:367060/81‑1 (MQ=255)
gaTTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCg > 1:367111/1‑79 (MQ=255)
gaTTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCa < 2:367062/81‑1 (MQ=255)
tCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGgc < 1:367063/80‑1 (MQ=255)
cGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGgcgc > 2:367113/1‑81 (MQ=255)
cAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTg < 2:367064/81‑1 (MQ=255)
aaTCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGtt > 2:367129/1‑81 (MQ=255)
aTCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGtt > 1:367117/1‑80 (MQ=255)
gACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAAt > 1:367099/1‑81 (MQ=255)
gACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAAt > 2:367106/1‑81 (MQ=255)
aCGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAAt > 2:367133/1‑80 (MQ=255)
cGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCa < 1:367065/81‑1 (MQ=255)
gatgtcgatgtcGGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCg > 1:367122/1‑81 (MQ=255)
atgtcgatgtcgGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCACTGTTTAATCAGGGCGTGTCg < 2:367066/80‑1 (MQ=255)
gtcgGAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGgacgac > 1:367121/1‑81 (MQ=255)
ggAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTa > 1:367120/1‑81 (MQ=255)
gAGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTAc < 1:367067/81‑1 (MQ=255)
aGGCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACg > 2:367130/1‑81 (MQ=255)
ggCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGc < 1:367068/81‑1 (MQ=255)
gCAGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCa < 1:367069/81‑1 (MQ=255)
aGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCAcc > 1:367118/1‑81 (MQ=255)
aGCTCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCAcc < 1:367070/81‑1 (MQ=255)
tCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCAccgcc > 2:367151/1‑81 (MQ=255)
tCACTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCAccgcc > 1:367135/1‑81 (MQ=255)
cTGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTc < 2:367071/81‑1 (MQ=255)
tGCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGt > 1:367132/1‑79 (MQ=255)
gCCCGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAg > 2:367137/1‑81 (MQ=255)
cccGCCGTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGc < 2:367072/81‑1 (MQ=255)
cgccgTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCaa > 1:367126/1‑81 (MQ=255)
cgTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGc > 1:367124/1‑81 (MQ=255)
gTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGcc < 2:367073/81‑1 (MQ=255)
gTACGCGCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGc > 1:367127/1‑80 (MQ=255)
cgcgCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAAc < 2:367075/81‑1 (MQ=255)
cgcgCCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAAc < 1:367074/81‑1 (MQ=255)
|
GGCTCCGACGATTTCGCAAATCGACGGTGTTGGTGATGTCGATGTCGGAGGCAGCTCACTGCCCGCCGTACGCGTCGGGCTGAATCCGCAGGCGCTGTTTAATCAGGGCGTGTCGCTGGACGACGTACGCACCGCCGTCAGCAATGCCAAC > NC_000913/2158871‑2159021
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
