Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,182,770 |
C→A |
A4A (GCG→GCT) |
yegW ← |
putative DNA‑binding transcriptional regulator YegW |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,182,770 | 0 | C | A | 100.0%
| 73.7
/ NA
| 23 | A4A (GCG→GCT) | yegW | putative DNA‑binding transcriptional regulator YegW |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (10/13); total (10/13) |
CGGCAAACTTAATATAAAGCGGCGTGTTATCCGCCGCTAAAATACGCTCGTTCAGTTGGGCAATCAGCTGGGTATGCGCTTGTTCCATTTGTCTTTTTCCTGCCGGGGAGTCTGGTGGGAGTATATCACTGCTTCTTATTTAAGGCGTTTCTT > NC_000913/2182694‑2182846
|
cGGCAAACTTAATATAAAGCGGCGTGTTATCCGCCGCTAAAATACGCTCGTTCAGTTGGGCAATCAGCTGGGTATGAGCtt > 1:371273/1‑81 (MQ=255)
ggCAAACTTAATATAAAGCGGCGTGTTATCCGCCGCTAAAATACGCTCGTTCAGTTGGGCAATCAGCTGGGTATGAGCtt < 1:371243/80‑1 (MQ=255)
taAAGCGGCGTGTTATCCGCCGCTAAAATACGCTCGTTCAGTTGGGCAATCAGCTGGGTATGAGCTTGTTCCATTTGTCtt > 2:371270/1‑81 (MQ=255)
gcggcgTGTTATCCGCCGCTAAAATACGCTCGTTCAGTTGGGCAATCAGCTGGGTATGAGCTTGTTCCATTTGTCTTTTTc < 1:371244/81‑1 (MQ=255)
cgTGTTATCCGCCGCTAAAATACGCTCGTTCAGTTGGGCAATCAGCTGGGTATGAGCTTGTTCCATTTGTCTTTTTCCTGc > 2:371267/1‑81 (MQ=255)
tgtTATCCGCCGCTAAAATACGCTCGTTCAGTTGGGCAATCAGCTGGGTATGAGCTTGTTCCATTTGTCTTTTTCCTGCCg < 2:371245/81‑1 (MQ=255)
cTAAAATACGCTCGTTCAGTTGGGCAATCAGCTGGGTATGAGCTTGTTCCATTTGTCTTTTTCCTGCCGGGGAGTCtggtg > 1:371268/1‑81 (MQ=255)
aaaTACGCTCGTTCAGTTGGGCAATCAGCTGGGTATGAGCTTGTTCCATTTGTCTTTTTCCTGCCGGGGAGTCtggtgg < 2:371246/79‑1 (MQ=255)
gTTCAGTTGGGCAATCAGCTGGGTATGAGCTTGTTCCATTTGTCTTTTTCCGGCCGGGGAGTCTGGTGGGAGTATATCAcg < 2:371247/81‑2 (MQ=255)
ttCAGTTGGGCAATCAGCTGGGTATGAGCTTGTTCCATTTGTCTTTTTCCTGCCGGGGAGTCTGGTGGGAGTATATCACTg > 2:668842/1‑81 (MQ=255)
cAGTTGGGCAATCAGCTGGGTATGAGCTTGTTCCATTTGTCTTTTTCCTGCCGGGGAGTCTGGTGGGAGTATATCACTGct > 1:371272/1‑81 (MQ=255)
aGTTGGGCAATCAGCTGGGTATGAGCTTGTTCCATTTGTCTTTTTCCTGCCGGGGAGTCTGGTGGGAGTATATCACTGctt > 1:371271/1‑81 (MQ=255)
gTTGGGCAATCAGCTGGGTATGAGCTTGTTCCATTTGTCTTTTTCCTGCCGGGGAGTCTGGTGGGAGTATATCACTGcttc < 2:371248/81‑1 (MQ=255)
gggCAATCAGCTGGGTATGAGCTTGTTCCATTTGTCTTTTTCCTGCCGGGGAGTCTGGTGGGAGTATATCACTGcttctt < 2:371250/80‑1 (MQ=255)
gggCAATCAGCTGGGTATGAGCTTGTTCCATTTGTCTTTTTCCTGCCGGGGAGTCTGGTGGGAGTATATCACTGcttctt < 1:371249/80‑1 (MQ=255)
gCAATCAGCTGGGTATGAGCTTGTTCCATTTGTCTTTTTCCTGCCGGGGAGTCTGGTGGGAGTATATCACTGCTTCTTAtt < 2:371251/81‑1 (MQ=255)
cAATCAGCTGGGTATGAGCTTGTTCCATTTGTCTTTTTCCTGCCGGGGAGTCTGGTGGGAGTATATCACTGCTTCTTAttt < 2:371252/81‑1 (MQ=255)
tCAGCTGGGTATGAGCTTGTTCCATTTGTCTTTTTCCTGCCGGGGAGTCTGGTGGGAGTATATCACTGCTTCTTATTTAAg < 2:371253/81‑1 (MQ=255)
gCTGGGTATGAGCTTGTTCCATTTGTCTTTTTCCTGCCGGGGAGTCTGGTGGGAGTATATCACTGCTTCTTATTTAAGGCg < 1:371254/81‑1 (MQ=255)
cTGGGTATGAGCTTGTTCCATTTGTCTTTTTCCTGCCGGGGAGTCTGGTGGGAGTATATCACTGCTTCTTATTTAAGGCGt > 1:371278/1‑81 (MQ=255)
ggTATGAGCTTGTTCCATTTGTCTTTTTCCTGCCGGGGAGTCTGGTGGGAGTATATCACTGCTTCTTATTTAAGGCGttt < 2:371255/80‑1 (MQ=255)
ggTATGAGCTTGTTCCATTTGTCTTTTTCCTGCCGGGGAGTCTGGTGGGAGTATATCACTGCTTCTTATTTAAGGCGTTTc > 1:371280/1‑81 (MQ=255)
aTGAGCTTGTTCCATTTGTCTTTTTCCTGCCGGGGAGTCTGGTGGGAGTATATCACTGCTTCTTATTTAAGGCGTTTCtt > 1:371274/1‑80 (MQ=255)
|
CGGCAAACTTAATATAAAGCGGCGTGTTATCCGCCGCTAAAATACGCTCGTTCAGTTGGGCAATCAGCTGGGTATGCGCTTGTTCCATTTGTCTTTTTCCTGCCGGGGAGTCTGGTGGGAGTATATCACTGCTTCTTATTTAAGGCGTTTCTT > NC_000913/2182694‑2182846
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
