Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,295,698 |
C→T |
G208D (GGC→GAC) |
ccmC ← |
heme trafficking system membrane protein CcmC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,295,698 | 0 | C | T | 100.0%
| 111.6
/ NA
| 32 | G208D (GGC→GAC) | ccmC | heme trafficking system membrane protein CcmC |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (16/16); total (16/16) |
ACGGCGTTTTTCCATCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGCCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCCGCGTTGATCCCTGATGCAGG > NC_000913/2295625‑2295775
|
acggCGTTTTTCCATCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAAt < 1:390655/81‑1 (MQ=255)
tttCCATCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACcag < 1:390656/80‑1 (MQ=255)
tttCCATCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACcag < 1:390657/80‑1 (MQ=255)
tCCATCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACcagcg > 1:390692/1‑80 (MQ=255)
aTCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACcagcgcagc < 1:390659/81‑1 (MQ=255)
aTCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACcagcgcagc < 2:390658/81‑1 (MQ=255)
tCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACcagcgcagcg > 1:390698/1‑81 (MQ=255)
aaaaTCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGaa > 2:390699/1‑81 (MQ=255)
aaaTCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAAc < 1:390660/81‑1 (MQ=255)
aaTCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACg < 1:390661/81‑1 (MQ=255)
aaaTTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCAt < 2:390663/80‑1 (MQ=255)
aaaTTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATc > 2:390704/1‑81 (MQ=255)
aaaTTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATc < 2:390662/81‑1 (MQ=255)
aCGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCg > 1:390710/1‑80 (MQ=255)
catccgcatcAGCGTCAGCGTGGGAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATc < 1:390664/81‑1 (MQ=255)
ccgcatcAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGa > 1:390706/1‑80 (MQ=255)
atcAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACtt > 2:390701/1‑81 (MQ=255)
cgtcagcgtGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTtgctg < 1:390665/81‑1 (MQ=255)
gtcagcgtGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTtgctg > 1:390708/1‑80 (MQ=255)
gcgtGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATcc < 1:390666/81‑1 (MQ=255)
cgtGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCcg < 2:390667/81‑1 (MQ=255)
gtGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCcgc > 2:390702/1‑81 (MQ=255)
gtGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCcgc > 2:390713/1‑81 (MQ=255)
ggCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCCGCGt > 1:390716/1‑81 (MQ=255)
aGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCCGCGTTGa > 2:390711/1‑81 (MQ=255)
gACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCCGCGTTGAt > 1:390703/1‑81 (MQ=255)
gACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCCGCGTTGAt > 1:390700/1‑81 (MQ=255)
ggAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCCGCGTTGATCCCt < 2:390668/81‑1 (MQ=255)
gAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCCGCGTTGATCCCTg < 2:390669/81‑1 (MQ=255)
aGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCCGCGTTGATCCCTGATGc < 1:390670/81‑1 (MQ=255)
gAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCCGCGTTGATCCCTGATGCAg > 1:390688/1‑81 (MQ=255)
aaGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCCGCGTTGATCCCTGATGCTgg > 1:390705/1‑81 (MQ=255)
|
ACGGCGTTTTTCCATCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGCCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCCGCGTTGATCCCTGATGCAGG > NC_000913/2295625‑2295775
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
