Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,295,698 |
C→T |
G208D (GGC→GAC) |
ccmC ← |
heme trafficking system membrane protein CcmC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,295,698 | 0 | C | T | 100.0%
| 107.1
/ NA
| 31 | G208D (GGC→GAC) | ccmC | heme trafficking system membrane protein CcmC |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (23/8); total (23/8) |
ACGGACGGCGTTTTTCCATCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGCCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCCGCGTTGATCCCTGATG > NC_000913/2295621‑2295771
|
acggacggCGTTTTTCCATCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCaa < 1:417437/81‑1 (MQ=255)
acggacggCGTTTTTCCATCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCa > 2:417460/1‑80 (MQ=255)
acggCGTTTTTCCATCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAAt > 2:417471/1‑81 (MQ=255)
acggCGTTTTTCCATCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAAt < 2:417438/81‑1 (MQ=255)
cggCGTTTTTCCATCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATc > 1:417474/1‑81 (MQ=255)
ggCGTTTTTCCATCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATc > 2:417466/1‑80 (MQ=255)
cGTTTTTCCATCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGAc > 1:417458/1‑81 (MQ=255)
cGTTTTTCCATCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGAc > 2:417454/1‑81 (MQ=255)
gTTTTTCCATCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGAcc < 2:417439/81‑1 (MQ=255)
cAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAgcggcg > 2:417488/1‑80 (MQ=255)
aaaTCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAAc > 2:417476/1‑81 (MQ=255)
aaTCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACg < 2:417440/81‑1 (MQ=255)
tACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCg > 2:417515/1‑81 (MQ=255)
tACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCg > 2:417491/1‑81 (MQ=255)
tACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCg > 1:417478/1‑81 (MQ=255)
aCGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCg > 1:417486/1‑80 (MQ=255)
cgcatccgcatcAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCgg < 2:417441/80‑1 (MQ=255)
catccgcatcAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATc < 1:417442/81‑1 (MQ=255)
ccgcatcAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGa > 2:417468/1‑80 (MQ=255)
catcAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACt < 1:417443/81‑1 (MQ=255)
atcAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACtt > 1:417475/1‑81 (MQ=255)
atcAGCGTCAGCGTGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACtt < 1:417444/81‑1 (MQ=255)
tcagcgtGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCa > 2:417493/1‑81 (MQ=255)
agcgtGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATc > 1:417481/1‑81 (MQ=255)
agcgtGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATc > 1:417479/1‑81 (MQ=255)
cgtGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCcg > 1:417494/1‑81 (MQ=255)
gtGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCcgc > 1:417480/1‑81 (MQ=255)
gtGGCAGACAGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCcgc > 1:417495/1‑81 (MQ=255)
aGGAGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCCGCGTTGATccc > 1:417485/1‑81 (MQ=255)
aGCAGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCCGCGTTGATCCCTGa > 2:417487/1‑81 (MQ=255)
aGGAAGTCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCCGCGTTGATCCCTGATg > 2:417497/1‑80 (MQ=255)
|
ACGGACGGCGTTTTTCCATCAGCAAAATCAAATTACGCATCCGCATCAGCGTCAGCGTGGCAGACAGGAGCAGGAAGCCAAAAATCGACCAGCGCAGCGGCGAACGCATCGCCGGATCGATACTTTGCTGCATCCGCGTTGATCCCTGATG > NC_000913/2295621‑2295771
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
