Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,360,002 |
C→T |
E51K (GAA→AAA) |
yfaV ← |
putative transporter YfaV |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,360,002 | 0 | C | T | 100.0%
| 109.1
/ NA
| 32 | E51K (GAA→AAA) | yfaV | putative transporter YfaV |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (19/13); total (19/13) |
TGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACA > NC_000913/2359924‑2360078
|
tGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTTAt > 1:402499/1‑81 (MQ=255)
cATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTTATTACt < 2:402454/81‑1 (MQ=255)
aTCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTTATTACTc < 2:402456/81‑1 (MQ=255)
aTCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTTATTACTc < 2:402455/81‑1 (MQ=255)
gCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATc > 1:402493/1‑80 (MQ=255)
cGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAAt < 2:402457/81‑1 (MQ=255)
ggAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATc > 2:402490/1‑81 (MQ=255)
acacCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTgg < 1:402458/81‑1 (MQ=255)
cacCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGt < 2:402459/81‑1 (MQ=255)
acCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTgg > 1:402496/1‑79 (MQ=255)
acCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGTa < 1:402460/81‑1 (MQ=255)
gCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTg < 1:402461/81‑1 (MQ=255)
atatACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTgg > 2:402546/1‑80 (MQ=255)
tataCCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCACTCTGGTAGGTCTGTTTGGc > 1:402510/1‑80 (MQ=255)
cacaAAGAAAATGCCTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAAcc < 1:402463/81‑1 (MQ=255)
cacaAAGAAAATGCCTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAAcc < 1:402462/81‑1 (MQ=255)
aaaGAAAATGCCTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGat < 2:402464/81‑1 (MQ=255)
aaGAAAATGCCTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGata > 2:402489/1‑81 (MQ=255)
aaTGCCTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCg > 1:402495/1‑80 (MQ=255)
aaTGCCTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCg > 2:402501/1‑80 (MQ=255)
tGCCTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAAc > 1:402494/1‑81 (MQ=255)
gCCTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACg > 2:402486/1‑81 (MQ=255)
ccTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACgg > 1:402503/1‑81 (MQ=255)
cTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTTGCAAAACCGATATTCGAACGGt > 2:402511/1‑81 (MQ=255)
cTGCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGt < 1:402465/81‑1 (MQ=255)
gCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTc > 1:402508/1‑80 (MQ=255)
gCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTc > 2:402516/1‑80 (MQ=255)
gCTCCCAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTc > 2:402488/1‑80 (MQ=255)
ccAGCGCATAAGCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGaa < 2:402466/81‑1 (MQ=255)
aTAAGCTTTATTACTCAACCCGGTATCAATCTGGTAGG‑‑TGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGca > 2:402500/1‑81 (MQ=255)
aGCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGca > 2:402497/1‑80 (MQ=255)
gCTTTATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGTACGGTCGAGAAACGCCAGcaca > 1:736334/1‑81 (MQ=255)
|
TGCGCATCAAAAGATTCGCCGGAACACCCAGAAACGCATATACCACAAAGAAAATGCCTGCTCCCAGCGCATAAGCTTCATTACTCAACCCGGTATCAATCTGGTAGGTCTGTTTGGCAAAACCGATATTCGAACGGTCGAGAAACGCCAGCACA > NC_000913/2359924‑2360078
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
