Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,365,594 |
C→T |
L9L (TTG→TTA) |
ais ← |
putative lipopolysaccharide core heptose(II)‑phosphate phosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,365,594 | 0 | C | T | 100.0%
| 74.2
/ NA
| 21 | L9L (TTG→TTA) | ais | putative lipopolysaccharide core heptose(II)‑phosphate phosphatase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (10/11); total (10/11) |
CTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATT > NC_000913/2365517‑2365668
|
cTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTTAAc > 2:430724/1‑81 (MQ=255)
cggcATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTTAACGAAGAGCgg > 2:430708/1‑80 (MQ=255)
cggcATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTTAACGAAGAGCGGc < 1:430686/81‑1 (MQ=255)
cATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTTAACGAAGAGCGGCaa > 1:430692/1‑80 (MQ=255)
tGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTTAACGAAGAGCGGCaaaaa < 2:430687/81‑1 (MQ=255)
ccGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTTAACGAAGAGCGGCAAAAAGCTAACACGTa > 2:430721/1‑80 (MQ=255)
cAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTTAACGAAGAGCGGCAAAAAGCTAACACGTAAACTc < 2:430688/81‑1 (MQ=255)
aTTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTTAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCa < 1:430689/81‑1 (MQ=255)
gCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTTAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCAcc > 1:430722/1‑80 (MQ=255)
agcgCCAGTAAAATGATGATATATTTTTTTGACTTTAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGAc < 1:430690/81‑1 (MQ=255)
gcCAGTAAAATGATGATATATTTTTTTGACTTTAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAg > 1:430728/1‑81 (MQ=255)
ccAGTAAAATGATGATATATTTTTTTGACTTTAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAgc < 1:430691/81‑1 (MQ=255)
gTAAAATGATGATATATTTTTTTGACTTTAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAgcgc > 2:430723/1‑80 (MQ=255)
tgatgaTATATTTTTTTGACTTTAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGa < 2:430692/81‑1 (MQ=255)
atgatATATTTTTTTGACTTTAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGAc < 2:430693/80‑1 (MQ=255)
atgatATATTTTTTTGACTTTAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACa < 2:430694/81‑1 (MQ=255)
atatatTTTTTTGACTTTAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAAtt < 2:430695/81‑1 (MQ=255)
ttttGACTTTAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGa > 1:430727/1‑80 (MQ=255)
ttttGACTTTAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGa < 1:430696/80‑1 (MQ=255)
tGACTTTAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAAtt > 2:430731/1‑81 (MQ=255)
gACTTTAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAAtt > 2:430729/1‑80 (MQ=255)
|
CTACTCCAGGCGGCATGAGTACCCAGTCCGGCAATTGCAGCGAGCGCCAGTAAAATGATGATATATTTTTTTGACTTCAACGAAGAGCGGCAAAAAGCTAACACGTAAACTCCACCTATAGACAAGCGCAACCAGACAATTACCGTGAAATT > NC_000913/2365517‑2365668
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
