Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,562,119 |
C→T |
G3G (GGC→GGT) |
yffO → |
CPZ‑55 prophage; uncharacterized protein YffO |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,562,119 | 0 | C | T | 100.0%
| 71.4
/ NA
| 21 | G3G (GGC→GGT) | yffO | CPZ‑55 prophage; uncharacterized protein YffO |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (11/10); total (11/10) |
TTTTCAACCTCAATTCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGCGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGCCAGC > NC_000913/2562043‑2562190
|
ttttCAACCTCAATTCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAAc > 1:436892/1‑81 (MQ=255)
ttttCAACCTCAATTCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAAc < 2:436867/81‑1 (MQ=255)
ttCAACCTCAATTCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACt > 1:436885/1‑80 (MQ=255)
cAACCTCAATTCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGa > 2:436883/1‑80 (MQ=255)
aaCCTCAATTCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGAt < 1:436868/80‑1 (MQ=255)
ttCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACaa < 2:436869/81‑1 (MQ=255)
aaaTGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGAc < 1:436870/81‑1 (MQ=255)
aaaaTAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGa > 2:436896/1‑81 (MQ=255)
aaaTAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGa > 2:436893/1‑80 (MQ=255)
aaTAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGaca < 2:436871/81‑1 (MQ=255)
aCGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCa < 2:436872/80‑1 (MQ=255)
gTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGa < 1:436874/81‑1 (MQ=255)
gTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGa < 2:436873/81‑1 (MQ=255)
tttCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAacac > 2:436898/1‑81 (MQ=255)
tcatcaTTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACAcc > 1:436886/1‑80 (MQ=255)
catcatTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCg > 1:436894/1‑80 (MQ=255)
atcatTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGa > 1:436910/1‑80 (MQ=255)
catTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGaaa > 1:436900/1‑80 (MQ=255)
ttATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAgc > 1:436908/1‑81 (MQ=255)
gggTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCg < 2:436875/81‑1 (MQ=255)
aTGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGCCAGc < 1:436876/80‑1 (MQ=255)
|
TTTTCAACCTCAATTCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGCGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGCCAGC > NC_000913/2562043‑2562190
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
