Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,562,119 |
C→T |
G3G (GGC→GGT) |
yffO → |
CPZ‑55 prophage; uncharacterized protein YffO |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,562,119 | 0 | C | T | 100.0%
| 79.6
/ NA
| 23 | G3G (GGC→GGT) | yffO | CPZ‑55 prophage; uncharacterized protein YffO |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (15/8); total (15/8) |
AACCTCAATTCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGCGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGCCAGCT > NC_000913/2562048‑2562191
|
aaCCTCAATTCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGTAAGGTGAACTGa > 2:467267/1‑79 (MQ=255)
aaTTCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGaaaa > 2:467271/1‑80 (MQ=255)
ttCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACaa > 2:467270/1‑81 (MQ=255)
cGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGt > 2:467262/1‑80 (MQ=255)
aTGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACAt < 1:467241/81‑1 (MQ=255)
tGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACAtt > 2:467261/1‑81 (MQ=255)
aCGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCa < 2:467242/80‑1 (MQ=255)
aCGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCa < 2:467243/80‑1 (MQ=255)
gTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCg > 1:467281/1‑80 (MQ=255)
tttCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAaca < 2:467244/80‑1 (MQ=255)
ttCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAacac < 1:467245/80‑1 (MQ=255)
ttCATCATTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACAcc > 1:467265/1‑81 (MQ=255)
tcatcaTTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACAcc > 2:467264/1‑80 (MQ=255)
catcatTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCg > 2:467258/1‑80 (MQ=255)
atcatTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGa > 2:467266/1‑80 (MQ=255)
catTTATTGGGGGTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGaaa > 1:467277/1‑80 (MQ=255)
gggTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCg > 1:467279/1‑81 (MQ=255)
gTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGc < 2:793429/81‑1 (MQ=255)
gTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGc > 2:467269/1‑81 (MQ=255)
gTTTTATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGc < 2:467246/81‑1 (MQ=255)
tttATGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGc > 2:467273/1‑79 (MQ=255)
aTGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGCCAGc > 1:467274/1‑80 (MQ=255)
tGGAAGGTGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGCCAGCt < 2:467247/80‑1 (MQ=255)
|
AACCTCAATTCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTATGGAAGGCGAACTGATAGAAAACAATGGGTTAGACATTTATGACACCAGCGAAACACCGAAAAAGCGCGGTCGGCCAGCT > NC_000913/2562048‑2562191
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
