Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,638,485 |
A→G |
I56I (ATT→ATC) |
bamB ← |
outer membrane protein assembly factor BamB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,638,485 | 0 | A | G | 100.0%
| 100.8
/ NA
| 29 | I56I (ATT→ATC) | bamB | outer membrane protein assembly factor BamB |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (13/16); total (13/16) |
TTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCAATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCAACGGTTGGCAATGGGGACATC > NC_000913/2638409‑2638560
|
ttACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCGAt < 2:451615/79‑1 (MQ=255)
ttACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCGAt < 2:451616/79‑1 (MQ=255)
tACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCGATGcc > 1:451641/1‑81 (MQ=255)
tACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCGATGcc > 1:451658/1‑81 (MQ=255)
aCTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCGATGcc < 2:451617/80‑1 (MQ=255)
aCTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCGATGCCg > 1:451652/1‑81 (MQ=255)
aGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCGATGCCGCTACCAAc < 2:451618/81‑1 (MQ=255)
cGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCt > 1:451667/1‑81 (MQ=255)
gCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCTc < 1:451619/81‑1 (MQ=255)
gCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCTGATGCCGCTACCAACGGAAGTGCTCCAc > 2:451668/1‑81 (MQ=255)
gACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGt < 2:451620/81‑1 (MQ=255)
aCAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGTg > 2:451657/1‑81 (MQ=255)
ttGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCgga < 2:451621/81‑2 (MQ=255)
ttGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGc < 1:451623/81‑1 (MQ=255)
ttGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGc < 2:451622/81‑1 (MQ=255)
tCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTa < 2:451624/81‑1 (MQ=255)
ccGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTa > 2:451660/1‑80 (MQ=255)
cGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTaaa < 2:451625/81‑1 (MQ=255)
aGTGCCGGATGAAGATTGGAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTgg > 2:451673/1‑81 (MQ=255)
tGCCGGATGAAGATTGGAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGtt < 2:451626/81‑1 (MQ=255)
tGCCGGATGAAGATTGGAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGtt < 2:451627/81‑1 (MQ=255)
ccGGATGAAGATTGGAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGtttt < 1:451628/81‑1 (MQ=255)
gATGAAGATTGGAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCaa > 2:451659/1‑81 (MQ=255)
aTGAAGATTGGAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCAAc < 1:451629/81‑1 (MQ=255)
tGAAGATTGGAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCAACg < 1:451630/81‑1 (MQ=255)
tGGAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCAACGGTTGGc > 2:451661/1‑80 (MQ=255)
ggAATAGAAGTTGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCAACGGTTGGCaa > 1:451663/1‑81 (MQ=255)
gAAGTTGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCAACGGTTGGCAATGGGGa > 1:451662/1‑81 (MQ=255)
ttGCCGATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCAACGGTTGGCAATGGGGACATc > 1:451669/1‑81 (MQ=255)
|
TTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCAATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCAACGGTTGGCAATGGGGACATC > NC_000913/2638409‑2638560
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
