Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
NC_000913 |
2,737,118 |
IS1 (+) +8 bp |
intergenic (+235/‑29) |
bamD → / → raiA |
outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
1978503 = | NA (NA) | 26 (0.890) |
22/160 |
0.4 |
100% |
noncoding (768/768 nt) |
IS1 |
repeat region |
| ? | NC_000913 |
2737118 = |
0 (0.000) | intergenic (+235/‑36) |
bamD/raiA |
outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor |
| * |
? |
NC_000913 |
= 1979270 | NA (NA) | 16 (0.550) |
14/160 |
1.0 |
100% |
noncoding (1/768 nt) |
IS1 |
repeat region |
| ? | NC_000913 |
= 2737125 |
0 (0.000) | intergenic (+242/‑29) |
bamD/raiA |
outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor |
AAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1978581‑1978503
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGG > NC_000913/2737118‑2737196
AAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGA < 1:637819/81‑1
TGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAATTCACC > 1:470823/1‑80
AGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAATTCACCAAGA > 1:470836/1‑81
GCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAATTCACCAAGAC < 2:193250/81‑1
CTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAATTCACCAAGACG < 1:3659/81‑1
GCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAATTCACCAAGACGG > 1:470821/1‑80
GCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAATTCACCAAGACGG > 1:470827/1‑80
CATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAATTCACCAAGACGGG > 1:470825/1‑80
CATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAATTCACCAAGACGGG < 2:50748/80‑1
ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAATTCACCAAGACGGGAA < 1:57740/81‑1
ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAATTCACCAAGACGGG > 1:470833/1‑79
ATGACAAAGTCATCGGGCATTATCCGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAATTCACCAAGACGGG > 2:470832/1‑79
AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAATTCACCAAGACGGGAAGACAA < 2:57722/81‑1
AGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAATTCACCAAGACGGGAAGACAAGA < 1:54952/81‑1
AGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAATTCACCAAGACGGGAAGACAA > 1:470834/1‑79
AGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAATTCACCAAGACGGGAAGACAA > 2:470838/1‑79
GGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAATTCACCAAGACGGGAAGACAAGAGGTAAAA > 1:470831/1‑81
CACTATCAATAAGTTGGAGTCATTACCGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACC < 1:54947/81‑1
CTATCAATAAGTTGGAGTCATTACCGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAG < 1:50739/81‑1
ATCAATAAGTTGGAGTCATTACCGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGC > 1:470828/1‑80
AATAAGTTGGAGTCATTACCGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAA < 2:3654/80‑1
GTTGGAGTCATTACCGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATG > 1:470835/1‑81
GTCATTACCGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAAT > 2:470840/1‑80
TTACCGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTC > 1:470826/1‑81
CCGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGG > 1:470841/1‑81
CCGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGG < 2:470807/81‑1
AAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1978581‑1978503
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGG > NC_000913/2737118‑2737196
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
