Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,088,585 |
C→T |
A101V (GCT→GTT) |
galP → |
galactose:H(+) symporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,088,585 | 0 | C | T | 100.0%
| 93.2
/ NA
| 27 | A101V (GCT→GTT) | galP | galactose:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (11/16); total (11/16) |
CTTTAAACTCGGGCGCAAAAAGAGCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGCTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCGGTGGGTGTGGCCTCTTATACCGCAC > NC_000913/3088511‑3088662
|
cTTTAAACTCGGGCGCAAAAAGAGCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGcc < 2:536714/81‑1 (MQ=255)
cTTTAAACTCGGGCGCAAAAAGAGCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGcc < 2:536715/81‑1 (MQ=255)
tAAACTCGGGCGCAAAAAGAGCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCaa < 2:536716/80‑1 (MQ=255)
gggCGCAAAAAGAGCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGa < 2:536717/80‑1 (MQ=255)
cgcAAAAAGAGCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTa > 2:536751/1‑81 (MQ=255)
gagCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCt < 2:536718/81‑1 (MQ=255)
agCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCtt < 2:536720/81‑1 (MQ=255)
agCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCtt < 2:536719/81‑1 (MQ=255)
atgatCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCcgc < 1:536721/81‑1 (MQ=255)
gatCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGt > 2:536759/1‑81 (MQ=255)
gatCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGt > 1:536756/1‑81 (MQ=255)
ggCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAATCGTTGAAGTACTGATTCTTTCCCGCGTTCTa > 2:536749/1‑81 (MQ=255)
ggCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCt < 1:536722/80‑1 (MQ=255)
cgcAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACt > 2:536755/1‑81 (MQ=255)
gcAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTg > 2:536757/1‑81 (MQ=255)
aaTTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTggg < 1:536723/81‑1 (MQ=255)
tttgtttgTTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCt > 2:536765/1‑81 (MQ=255)
ttgtttgtTGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTg > 2:536767/1‑81 (MQ=255)
gtttgttGCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTgg < 2:536724/80‑1 (MQ=255)
tgttgCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCgg < 1:536725/80‑1 (MQ=255)
gttgCCGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCggt < 1:536726/80‑1 (MQ=255)
cGGTTCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCGGTGGgtgt < 1:536727/81‑1 (MQ=255)
tCGCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCGGTGGGTGTGGcc > 1:536774/1‑81 (MQ=255)
gCTGTTCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCGGTGGGTGTGGCctc < 1:536728/81‑1 (MQ=255)
ttCTCTGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCGGTGGGTGTGGCCTCtt < 2:536729/79‑1 (MQ=255)
tctGCGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCGGTGGGTGTGGCCTCTTATacc > 2:536778/1‑81 (MQ=255)
cGGTTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCGGTGGGCGTGGCCTCTTATaccgcac > 1:536766/1‑81 (MQ=255)
|
CTTTAAACTCGGGCGCAAAAAGAGCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGCTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTACTGGGGCTGGCGGTGGGTGTGGCCTCTTATACCGCAC > NC_000913/3088511‑3088662
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
