Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,008,343 |
T→C |
V278V (GTT→GTC) |
ygeX → |
2,3‑diaminopropionate ammonia‑lyase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,008,343 | 0 | T | C | 100.0%
| 133.9
/ NA
| 37 | V278V (GTT→GTC) | ygeX | 2,3‑diaminopropionate ammonia‑lyase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (21/16); total (21/16) |
CTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAA > NC_000913/3008266‑3008420
|
cTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGc > 1:558075/1‑81 (MQ=255)
tgttgAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGccac > 2:558098/1‑81 (MQ=255)
gAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACcat > 1:558088/1‑80 (MQ=255)
aaCCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACcatca > 2:558084/1‑81 (MQ=255)
aaCCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACcatc < 2:772756/80‑1 (MQ=255)
aCCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACcatcat > 1:558085/1‑81 (MQ=255)
aCAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAg > 1:558101/1‑81 (MQ=255)
aaaGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAggc > 1:558097/1‑81 (MQ=255)
aGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAggcct < 1:558031/81‑1 (MQ=255)
aGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAggcct > 2:558087/1‑81 (MQ=255)
aGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAggcct > 1:558082/1‑81 (MQ=255)
aCTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAggcctggcct < 2:558032/81‑1 (MQ=255)
tATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCtgtg < 1:558034/80‑1 (MQ=255)
tATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCtgt < 2:558033/79‑1 (MQ=255)
tttATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGc > 1:558104/1‑80 (MQ=255)
aTCGCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAAc > 2:558099/1‑81 (MQ=255)
cGCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAAcc > 1:558092/1‑80 (MQ=255)
cGCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAAcc > 2:558094/1‑80 (MQ=255)
gCTCCGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTa < 2:558035/81‑1 (MQ=255)
ccGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAAcc > 1:558091/1‑81 (MQ=255)
cGGCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAAccc < 1:558036/81‑1 (MQ=255)
gCGTCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCgc > 2:558095/1‑81 (MQ=255)
tCAAAGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCgctgg < 1:558037/81‑1 (MQ=255)
aaaGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCgctggg < 2:558038/80‑1 (MQ=255)
aaGGCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCgctgggct > 1:558100/1‑81 (MQ=255)
gCGACATCGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCGctgggctggg < 2:558039/81‑1 (MQ=255)
cGTCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATcc > 1:558103/1‑80 (MQ=255)
gTCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCt < 2:558040/80‑1 (MQ=255)
gTCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCt < 1:558041/80‑1 (MQ=255)
gTCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTa > 1:558105/1‑81 (MQ=255)
tCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTAc < 2:558042/81‑1 (MQ=255)
tCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTAc < 2:558044/81‑1 (MQ=255)
tCAACGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTAc < 1:558043/81‑1 (MQ=255)
aaCGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACg > 1:558118/1‑80 (MQ=255)
aCGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCGCTTGGCTGGGAAATCCTACGt > 2:558127/1‑80 (MQ=255)
aCGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGt > 2:558093/1‑80 (MQ=255)
cGTCGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTaa < 1:558045/81‑1 (MQ=255)
|
CTGCACAGCATTATTGTTGAACCTGACAAAGCTGACTGTATTTATCGCTCCGGCGTCAAAGGCGACATCGTCAACGTTGGCGGTGATATGGCCACCATCATGGCAGGCCTGGCCTGTGGCGAACCTAACCCGCTGGGCTGGGAAATCCTACGTAA > NC_000913/3008266‑3008420
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
