Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,497,005 |
G→A |
M1M (ATG→ATA) † |
nirC → |
nitrite transporter NirC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,497,005 | 0 | G | A | 100.0%
| 132.2
/ NA
| 36 | M1M (ATG→ATA) † | nirC | nitrite transporter NirC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (21/15); total (21/15) |
CTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCT > NC_000913/3496930‑3497081
|
cTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTa > 1:668089/1‑80 (MQ=255)
tCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTa > 2:668087/1‑78 (MQ=255)
cGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACa < 2:668057/79‑1 (MQ=255)
cGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACa < 1:668058/79‑1 (MQ=255)
tataTTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGacac < 2:668059/81‑1 (MQ=255)
atatTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCATATATTTACAGacac > 2:668093/1‑80 (MQ=255)
atatTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGacac > 1:668097/1‑80 (MQ=255)
tatTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACt < 1:668060/80‑1 (MQ=255)
atTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACTAt > 2:668084/1‑81 (MQ=255)
cAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACTATtaa > 1:668091/1‑80 (MQ=255)
ggACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACTATtaataa < 1:668061/81‑1 (MQ=255)
cATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACTATTAATAAgtg < 1:668062/81‑1 (MQ=255)
aTTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACTATTAATAAgtgt > 2:668086/1‑81 (MQ=255)
ttAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCgg < 1:668064/80‑1 (MQ=255)
ttAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCgg < 1:668063/80‑1 (MQ=255)
tAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCGGc < 1:668065/80‑1 (MQ=255)
aaCTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTa < 2:668066/80‑1 (MQ=255)
cTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTAACg > 1:668098/1‑81 (MQ=255)
tttGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTAACGCt < 1:668067/80‑1 (MQ=255)
tttGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTAACGCTg > 1:668096/1‑81 (MQ=255)
ttGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTAACGCTgc > 1:668117/1‑81 (MQ=255)
ttATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCa > 1:668092/1‑81 (MQ=255)
ttATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCa > 1:668101/1‑81 (MQ=255)
aTTTTTTGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCAtt > 1:668103/1‑81 (MQ=255)
ttttttGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCAtt < 2:668068/80‑1 (MQ=255)
ttGTTTTTATTTTTTAAAGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACg > 2:668123/1‑81 (MQ=255)
tttttATTTTTTAAAGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCt < 2:668069/81‑1 (MQ=255)
tttttATTTTTTAAAGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCt > 1:668088/1‑81 (MQ=255)
ttttATTTTTTAAAGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTg > 2:668090/1‑81 (MQ=255)
ttttttAAAGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGc < 2:668070/81‑1 (MQ=255)
ttAAAGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCaaa > 2:668094/1‑80 (MQ=255)
aGGATAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAAcc > 2:668115/1‑81 (MQ=255)
ggATAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAAccc < 1:668071/81‑1 (MQ=255)
tAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCt > 1:668131/1‑81 (MQ=255)
tAATCAAATATTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCt > 1:668095/1‑81 (MQ=255)
aaaTATTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCt > 1:668107/1‑81 (MQ=255)
|
CTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCT > NC_000913/3496930‑3497081
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
