Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,608,490 |
C→T |
A680A (GCC→GCT) |
zntA → |
Zn(2(+))/Cd(2(+))/Pb(2(+)) exporting P‑type ATPase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,608,490 | 0 | C | T | 100.0%
| 139.9
/ NA
| 39 | A680A (GCC→GCT) | zntA | Zn(2(+))/Cd(2(+))/Pb(2(+)) exporting P‑type ATPase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (17/22); total (17/22) |
AACCGCCGACGCAGCATTAACCCATAACCACCTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCCAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGAAAGGGATCTTCCTCGTCACCACGCTGTTAGGGATG > NC_000913/3608412‑3608562
|
aaCCGCCGACGCAGCATTAACCCATAACCACCTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTaa > 2:872830/1‑81 (MQ=255)
aaCCGCCGACGCAGCATTAACCCATAACCACCTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTaa > 1:695071/1‑81 (MQ=255)
ccgccgACGCAGCATTAACCCATAACCACCTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAata < 1:695020/81‑1 (MQ=255)
gccgACGCAGCACTAACCCATAACCACCTGCGCGGCCTGGTTCAAATGATTGAACTGGCACGCGCCACTCACGCTAATTTc > 2:695073/1‑81 (MQ=255)
ccgACGCAGCATTAACCCATAACCACCTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATcc > 2:695079/1‑81 (MQ=255)
gACGCAGCATTAACCCATAACCACCTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGc > 2:695081/1‑81 (MQ=255)
aCGCAGCATTAACCCATAACCACCTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGc > 2:695064/1‑80 (MQ=255)
gcagcaTTAACCCATAACCACCTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAg < 2:695021/81‑1 (MQ=255)
caTTAACCCATAACCACCTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACa > 2:695075/1‑81 (MQ=255)
aTTAACCCATAACCACCTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACAt > 1:695078/1‑81 (MQ=255)
ttAACCCATAACCACCTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATc < 1:695022/81‑1 (MQ=255)
ttAACCCATAACCACCTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATc < 1:695023/81‑1 (MQ=255)
aCCCATAACCACCTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACt < 1:695025/81‑1 (MQ=255)
aCCCATAACCACCTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACt < 2:695024/81‑1 (MQ=255)
cccATAACCACCTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTa > 1:695076/1‑81 (MQ=255)
cATAACCACCTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTAtt < 1:695026/81‑1 (MQ=255)
accTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTgg < 2:695027/81‑1 (MQ=255)
cTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTgggg > 1:695080/1‑81 (MQ=255)
tGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGc > 1:695089/1‑81 (MQ=255)
ggCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGaaa < 2:695028/81‑1 (MQ=255)
ggCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGa > 1:695088/1‑79 (MQ=255)
ggCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGa > 1:695084/1‑79 (MQ=255)
ccTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGAAAgg < 1:695029/81‑1 (MQ=255)
gCAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGAAAGGGATCtt > 2:695030/1‑81 (MQ=255)
cAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGAAAGGGATCtt < 1:695031/80‑1 (MQ=255)
cAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGAAAGGGATCTTc < 2:695032/81‑1 (MQ=255)
cAAATGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGAAAGGGATCTTc < 2:695033/81‑1 (MQ=255)
aaaTGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGAAAGGGATCTTcc < 2:695034/81‑1 (MQ=255)
aaTGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGAAAGGGATCTTCCt < 1:695035/81‑1 (MQ=255)
aTGATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGAAAGGGATCTTCCTc < 1:695036/81‑1 (MQ=255)
gATTGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGAAAGGGATCTTCCTCGt > 1:695083/1‑81 (MQ=255)
ttGAACTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGAAAGGGATCTTCCTCGTca < 2:695037/81‑1 (MQ=255)
aaCTGGCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGAAAGGGATCTTCCTCGTcacca < 2:695039/81‑1 (MQ=255)
aaCTGGCACGCGCCACTCACGCTAATATCCACCAGAACATCACTATTGCGCTGGGGCTGAAAGGGATCTTCCTCGTcacc < 2:695038/80‑1 (MQ=255)
ggCACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGAAAGGGAACTTCCTCGTCACCACGCt > 1:695090/1‑81 (MQ=255)
cACGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGAAAGGGATCTTCCTCGTCACCACGCTGt < 1:695040/81‑1 (MQ=255)
aCGCGCCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGAAAGGGATCTTCCTCGTCACCACGCTGtt < 1:695041/81‑1 (MQ=255)
gcgcCACTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGAAAGGGATCTTCCTCGTCACCACGCTGTTAg > 1:695086/1‑81 (MQ=255)
aCTCACGCTAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGAAAGGGATCTTCCTCGTCACCACGCTGTTAGGGATg < 1:695042/81‑1 (MQ=255)
|
AACCGCCGACGCAGCATTAACCCATAACCACCTGCGCGGCCTGGTGCAAATGATTGAACTGGCACGCGCCACTCACGCCAATATCCGCCAGAACATCACTATTGCGCTGGGGCTGAAAGGGATCTTCCTCGTCACCACGCTGTTAGGGATG > NC_000913/3608412‑3608562
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
