Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,704,055 |
G→A |
A236V (GCT→GTT) |
dppC ← |
dipeptide ABC transporter membrane subunit DppC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,704,055 | 0 | G | A | 100.0%
| 133.4
/ NA
| 37 | A236V (GCT→GTT) | dppC | dipeptide ABC transporter membrane subunit DppC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (19/18); total (19/18) |
GAACTGCAACACGTCGGAGAGCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATG > NC_000913/3703979‑3704132
|
gAACTGCAACACGTCGGAGAGCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGaacagc > 1:717212/1‑81 (MQ=255)
aaCTGCAACACGTCGGAGAGCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGcc < 1:717168/81‑1 (MQ=255)
cAACACGTCGGAGAGCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATc < 2:717169/81‑1 (MQ=255)
acacGTCGGAGAGCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCTATGCCGAGGAAACCAAGAACAGCCATATc > 2:717220/1‑79 (MQ=255)
cGTCGGAGAGCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGaa < 1:717170/81‑1 (MQ=255)
gTCGGAGAGCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAAt > 2:717219/1‑81 (MQ=255)
ggAGAGCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGc > 1:717221/1‑81 (MQ=255)
gagCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGtt < 2:717171/81‑1 (MQ=255)
agCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGt > 1:717226/1‑79 (MQ=255)
aTGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTagag < 2:717173/81‑1 (MQ=255)
aTGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTagag < 1:717172/81‑1 (MQ=255)
tGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAgaga < 1:717174/81‑1 (MQ=255)
gTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGaa < 2:717175/80‑1 (MQ=255)
gCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAAcc > 2:717256/1‑81 (MQ=255)
ccacACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAAcc < 2:717176/77‑1 (MQ=255)
cACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGc < 2:717177/81‑1 (MQ=255)
aCTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGc > 1:717239/1‑80 (MQ=255)
aGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGAc < 1:717178/79‑1 (MQ=255)
aGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGc < 1:717179/81‑1 (MQ=255)
gTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTg > 2:717234/1‑80 (MQ=255)
gTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTg > 1:717242/1‑80 (MQ=255)
gTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTg > 2:717243/1‑80 (MQ=255)
ggcggcTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAAc > 2:717240/1‑80 (MQ=255)
ggcggcTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAAc > 2:717229/1‑80 (MQ=255)
ggcTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAAt > 1:717236/1‑80 (MQ=255)
ggcTGTGCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATc < 2:717180/81‑1 (MQ=255)
tgCCCCCATGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAgc < 2:717181/79‑1 (MQ=255)
tGCCGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGc < 1:717182/81‑1 (MQ=255)
cGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGt > 2:717247/1‑81 (MQ=255)
cGAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGt > 1:717260/1‑81 (MQ=255)
gAGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGtt > 2:717227/1‑81 (MQ=255)
aGGAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTc < 1:717183/81‑1 (MQ=255)
ggAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCg > 2:717237/1‑81 (MQ=255)
gAAACCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCgg < 2:717184/81‑1 (MQ=255)
aaaCCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCgg > 2:717233/1‑80 (MQ=255)
aCCAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGaa < 1:717185/81‑1 (MQ=255)
cAAGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCggg > 2:717235/1‑77 (MQ=255)
aaGAACAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGAt > 1:717230/1‑81 (MQ=255)
agaaCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATg > 2:717282/1‑81 (MQ=255)
|
GAACTGCAACACGTCGGAGAGCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATG > NC_000913/3703979‑3704132
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
