Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F93 I1 R1
|
17 |
216.9 |
8475822 |
94.2% |
7984224 |
127.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913_3_bme_pgi |
4,141,192 |
Δ1 bp |
coding (1030/2502 nt) |
frwA ← |
putative PTS enzyme: Hpr, enzyme I and II components |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913_3_bme_pgi | 4,141,189 | 0 | C | . | 93.5%
| 818.2
/ 49.2
| 184 | coding (1033/2502 nt) | frwA | putative PTS enzyme: Hpr, enzyme I and II components |
| Reads supporting (aligned to +/- strand): ref base C (6/6); new base . (87/85); total (93/91) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.82e-01 |
Only 100 of 194 total aligned reads displayed.
CTGCGCTTCCACGGAGTGAGCGATGTTAGCGGCAATTTCAATGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTGC > NC_000913_3_bme_pgi/4141040‑4141332
|
gcgcTTCCACGGAGTGAGCGATGTTAGCGGCAATTTCAATGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTccc > 1:2030347/1‑150 (MQ=255)
cgcTTCCACGGAGTGAGCGATGTTAGCGGCAATTTCAATGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTccct < 2:2030347/150‑2 (MQ=255)
cgcTTCCACGGAGTGAGCGATGTTAGCGGCAATTTCAATGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTccct < 2:751326/150‑2 (MQ=255)
aCGGAGTGAGCGATGTTAGCGGCAATTTCAATGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCaa > 2:2465691/1‑150 (MQ=255)
aGTGAGCGATGTTAGCGGCAATTTCAATGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACcac > 2:2050148/1‑150 (MQ=255)
aGCGATGTTAGCGGCAATTTCAATGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTTTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAAc < 4:1495988/143‑1 (MQ=255)
gCGATGTTAGCGGCAATTTCAATGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCg > 4:1260721/1‑150 (MQ=255)
gATGTTAGCGGCAATTTCAATGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGc > 4:918964/1‑150 (MQ=255)
ttAGCGGCAATTTCAATGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCgg < 1:2439499/150‑1 (MQ=255)
ggCAATTTCAATGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTg < 1:885701/150‑1 (MQ=255)
aTTTCAATGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGt < 4:787445/150‑1 (MQ=255)
aTTTCAATGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGt > 3:1292574/1‑150 (MQ=255)
tttCCATGCGGATACCGTCAGCGGTACGGGCTTGTTTGGTCAGCCAGAGACGCTGTTGCTCACGCAGGGCGGCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTc > 4:1116869/1‑150 (MQ=255)
tttCAATGCGGATACCGTCAGCGGTNCGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTc > 1:2231383/1‑150 (MQ=255)
tttCAATGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTc > 2:1471134/1‑150 (MQ=255)
aTGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGatat > 1:1774269/1‑150 (MQ=255)
tGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGAtata < 1:1572127/150‑1 (MQ=255)
aTACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCg < 2:2270106/150‑1 (MQ=255)
tACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGt < 3:61179/150‑1 (MQ=255)
ccGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAAGCGCCCCGGCGTTGCCGTCGATATAAATCGttt < 2:1439649/150‑1 (MQ=255)
tCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTttgtt > 1:812220/1‑150 (MQ=255)
cAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTttgttg < 1:1033357/150‑1 (MQ=255)
gCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTtgct < 4:302943/150‑1 (MQ=255)
ggTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTtgctgc < 2:1711196/150‑1 (MQ=255)
ggTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCCTCGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTtgctgc < 3:434329/150‑1 (MQ=255)
tACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTc > 3:1401475/1‑91 (MQ=255)
tACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTc < 4:1401475/91‑1 (MQ=255)
aCGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCAc < 1:382244/150‑1 (MQ=255)
cGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACg > 2:2543304/1‑150 (MQ=255)
gggCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATc > 1:1449332/1‑106 (MQ=255)
gggCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACgg > 1:2065915/1‑150 (MQ=255)
ggCTTGTTGGGTCAGCCAGCCACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTGGCGGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCTCTAGCGCCCCGGCGTTGCCGTCGAGATAAATCGTTTGTTGCTGCCACGGa < 2:790963/150‑1 (MQ=255)
ggCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGa > 1:333071/1‑150 (MQ=255)
gCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGa > 4:1500783/1‑123 (MQ=255)
gCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAg > 3:1089902/1‑150 (MQ=255)
gCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAg > 2:216653/1‑150 (MQ=255)
gttgGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAg > 2:1595372/1‑150 (MQ=255)
ggTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGc > 3:1199574/1‑150 (MQ=255)
gTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGt > 1:1678289/1‑111 (MQ=255)
tCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAg < 1:1189410/144‑1 (MQ=255)
tCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATc < 1:1471134/150‑1 (MQ=255)
tCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATc > 1:613743/1‑150 (MQ=255)
aGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGcc < 2:309603/106‑1 (MQ=255)
aGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCaa < 1:1305583/150‑1 (MQ=255)
gCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAat > 2:1401651/1‑150 (MQ=255)
ccAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAata > 2:118670/1‑150 (MQ=255)
aGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATc > 2:444830/1‑150 (MQ=255)
acacGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCca > 1:898431/1‑150 (MQ=255)
acacGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCca < 2:442322/150‑1 (MQ=255)
acacGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCAACAATATCca > 3:423922/1‑150 (MQ=255)
acGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACgg < 2:889509/128‑1 (MQ=255)
tGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCGCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACaccaa > 3:1188188/1‑150 (MQ=255)
gCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCt < 3:860397/65‑1 (MQ=255)
cTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGc < 2:2216426/150‑1 (MQ=255)
tCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGttt < 2:114602/105‑1 (MQ=255)
tCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGttt > 1:114602/1‑105 (MQ=255)
tCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCg > 1:1949615/1‑150 (MQ=255)
tCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCg > 1:1406237/1‑150 (MQ=255)
aCGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCAc < 2:2496032/114‑1 (MQ=255)
aCGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGtt > 1:2000356/1‑150 (MQ=255)
cGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTg > 2:2370914/1‑150 (MQ=255)
cAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACGATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGa < 1:1726547/150‑1 (MQ=255)
aGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAgg < 3:224395/119‑1 (MQ=255)
aGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAgg > 4:224395/1‑119 (MQ=255)
cGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCAt > 3:1145954/1‑119 (MQ=255)
cGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCAt < 4:1145954/119‑1 (MQ=255)
cGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGtt > 1:2182864/1‑150 (MQ=255)
tCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTga > 2:1510345/1‑150 (MQ=255)
tCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTga > 4:631605/1‑150 (MQ=255)
ccTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTgaa < 3:1338734/150‑1 (MQ=255)
tGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTgaac < 3:1584995/150‑1 (MQ=255)
tGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACaccaac > 1:2504362/1‑130 (MQ=255)
tGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACaccaac < 2:2504362/130‑1 (MQ=255)
gTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTgaacga > 2:548923/1‑150 (MQ=255)
tACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGtt < 1:1052340/143‑1 (MQ=255)
tACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGtt > 2:1052340/1‑143 (MQ=255)
tACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGt > 1:552305/1‑142 (MQ=255)
tACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTgaacgaa < 1:2465691/150‑1 (MQ=255)
gcgGGCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTaa > 2:1980174/1‑103 (MQ=255)
gggCTTCTTGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGc < 2:333071/150‑1 (MQ=255)
ttcttGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACaccaa > 2:1828578/1‑119 (MQ=255)
ttcttGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACaccaa < 1:1828578/119‑1 (MQ=255)
ttcttGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAgg < 1:2041790/150‑1 (MQ=255)
cttGCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGAt > 2:27757/1‑150 (MQ=255)
gCTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCAc < 1:1493353/150‑1 (MQ=255)
cTGATAATAACGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGTGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCAcc > 1:293422/1‑150 (MQ=255)
atGATAATCACGCGCTCCGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGATGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCACCCAGCGTTGGAATGTTGAACGAACGGGCAGGGATCAcc < 2:1315536/149‑1 (MQ=255)
ataataACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGc < 3:1496866/115‑1 (MQ=255)
taataaCGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCaa < 4:132021/138‑1 (MQ=255)
taataaCGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATc > 2:1660146/1‑143 (MQ=255)
taataaCGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATc < 1:1660146/143‑1 (MQ=255)
taaCGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGccc < 1:1367447/39‑1 (MQ=255)
aaCGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTa > 1:1753238/1‑145 (MQ=255)
aaCGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTa < 2:1753238/145‑1 (MQ=255)
cGAGCTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTttgt < 3:994668/65‑1 (MQ=255)
cTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTAt > 2:1203042/1‑140 (MQ=255)
cTACGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAggtggt < 1:444830/150‑1 (MQ=255)
aCGGCTT‑CCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTgc > 2:687607/1‑150 (MQ=255)
ggCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGt > 1:1847399/1‑135 (MQ=255)
ggCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGt < 2:1847399/135‑1 (MQ=255)
|
CTGCGCTTCCACGGAGTGAGCGATGTTAGCGGCAATTTCAATGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTGC > NC_000913_3_bme_pgi/4141040‑4141332
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
