Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F141 I1 R1
|
21 |
114.5 |
4481172 |
94.2% |
4221264 |
126.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913_3_pae_tpiA |
3,853,806 |
T→C |
intergenic (+164/‑116) |
tisB → / → emrD |
toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913_3_pae_tpiA | 3,853,806 | 0 | T | C | 94.8%
| 372.3
/ 4.9
| 116 | intergenic (+164/‑116) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| Reads supporting (aligned to +/- strand): ref base T (3/3); new base C (62/47); total (65/51) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 120 total aligned reads displayed.
AAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTT > NC_000913_3_pae_tpiA/3853662‑3853950
|
aaaGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCa > 4:189247/1‑150 (MQ=255)
gAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTg > 2:1319352/1‑150 (MQ=255)
cGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCg > 1:449216/1‑150 (MQ=255)
ggAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCATCATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGta < 3:656455/150‑1 (MQ=255)
tttcccGGTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGtat > 4:716432/5‑150 (MQ=255)
gAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTc > 1:1014841/1‑141 (MQ=255)
gAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTc < 2:1014841/141‑1 (MQ=255)
tcTCCCCTTTGATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTTCCGCTTTTGTTTACATATTCTGCCGCTAAACAAGCCCCCATTCCTTGCGTATATCTgg < 4:508166/149‑1 (MQ=255)
gCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTgg < 1:230445/150‑1 (MQ=255)
ccTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCt < 2:301188/143‑1 (MQ=255)
ccTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCt > 1:301188/1‑143 (MQ=255)
cTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACa > 3:528330/1‑150 (MQ=255)
ttttATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACAt > 1:502662/1‑150 (MQ=255)
tttATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCCGGCTAACAtt > 2:38065/1‑150 (MQ=255)
ttATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATtc > 1:747793/1‑150 (MQ=255)
ttATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATtc < 2:1129743/150‑1 (MQ=255)
tatTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATtcatc < 2:199611/150‑1 (MQ=255)
tttAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCaa > 3:75374/1‑150 (MQ=255)
cGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGa < 3:695803/150‑1 (MQ=255)
gTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGAt > 1:181491/1‑150 (MQ=255)
ttcGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATa > 2:963943/3‑150 (MQ=255)
gggTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGAt < 4:528330/150‑1 (MQ=255)
ggTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCctc < 4:75374/150‑1 (MQ=255)
tgtCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGc < 1:787577/109‑1 (MQ=255)
tgtCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCtctc < 4:372393/150‑1 (MQ=255)
tCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTccc > 3:585874/1‑150 (MQ=255)
gatgcgatgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCa > 2:249917/1‑150 (MQ=255)
gatgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCtctc < 3:350752/140‑1 (MQ=255)
gatgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCtctc > 4:350752/1‑140 (MQ=255)
tgcTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATgg < 2:638419/150‑1 (MQ=255)
cTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCa > 1:651883/1‑141 (MQ=255)
cTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCa < 2:651883/141‑1 (MQ=255)
cTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGa > 2:305116/1‑150 (MQ=255)
cGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGc < 1:410183/150‑1 (MQ=255)
cGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTCTCACTGTTCTGCAGCTAAAACATGCCCCCTTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGc < 3:167813/150‑1 (MQ=255)
gCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGAtt > 1:846580/1‑125 (MQ=255)
gCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGAtt < 2:846580/125‑1 (MQ=255)
gCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCg < 2:780708/150‑1 (MQ=255)
gCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCg > 2:872790/1‑150 (MQ=255)
cATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACCAACCCCCATTCCTGGCGTATATATGGATAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGt < 3:299082/150‑1 (MQ=255)
aTCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTa < 1:1227685/150‑1 (MQ=255)
tCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAg > 1:689185/1‑150 (MQ=255)
cTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTACGGGAATGCGTAGt > 2:1238174/1‑150 (MQ=255)
ttATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATgg > 2:281047/1‑138 (MQ=255)
tATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAAtg > 3:234529/1‑110 (MQ=255)
tATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAAtg < 4:234529/110‑1 (MQ=255)
tCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATAATCGGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACt > 1:319868/1‑150 (MQ=255)
cGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGACTCCTCTCCCGCATCCATGGGACTGCCCAGTGACTTa > 4:106764/1‑150 (MQ=255)
gCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATtc < 1:970333/98‑1 (MQ=255)
gCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATtc > 2:970333/1‑98 (MQ=255)
ccTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTc > 2:765962/1‑150 (MQ=255)
ccTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTc < 2:1123164/150‑1 (MQ=255)
cTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTAt < 2:508496/127‑1 (MQ=255)
cTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTAt > 1:508496/1‑127 (MQ=255)
tACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTa > 3:357082/1‑150 (MQ=255)
aCCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATcccc < 1:1293254/64‑1 (MQ=255)
aCCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATcccc > 2:1293254/1‑64 (MQ=255)
tctctcCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAAtgtg > 4:330371/1‑98 (MQ=255)
tctctcCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAAtgtg < 3:330371/98‑1 (MQ=255)
tctctcCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAattat > 1:301323/1‑150 (MQ=255)
tcCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTAttttt > 2:34103/1‑150 (MQ=255)
tcCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTAttttt < 3:802645/150‑1 (MQ=255)
tcCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTAttttt < 1:34103/150‑1 (MQ=255)
ccGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTtat < 1:305116/150‑1 (MQ=255)
ccGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTtat < 4:759279/150‑1 (MQ=255)
aCATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGc > 4:14553/1‑150 (MQ=255)
ttATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATcc > 2:1181362/1‑150 (MQ=255)
aTTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGt > 1:46980/1‑150 (MQ=255)
aTTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGt < 2:733109/150‑1 (MQ=255)
ttGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTg > 1:837085/1‑150 (MQ=255)
gCCGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGAt > 1:385151/1‑150 (MQ=255)
cGCTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATgg < 3:784161/100‑1 (MQ=255)
gCTTTTGTTTACATATTCTGTCTCTAAACACTCCCCCTTCCCTGGCGTATATCTGGCTAACATTCAACAATGTTGTAGATTCCTCTACCGCATTTATGAAAATGCGTAGTGCCTTATTCTAATTATTTATATAATAGCATCCGTGATatt < 4:353328/150‑3 (MQ=255)
cTTTTGTTTACATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGt < 1:672578/143‑1 (MQ=255)
cTTTTGTTTACATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGt > 2:672578/1‑143 (MQ=255)
cTTTTGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACGTTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATg > 3:655798/1‑150 (MQ=255)
ttGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGaaa > 1:783550/1‑150 (MQ=255)
tGTTTACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGaaaa < 2:502662/150‑1 (MQ=255)
tttACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCCGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTTTTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAgg < 1:38065/150‑1 (MQ=255)
ttACATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGc > 3:801961/1‑150 (MQ=255)
aCATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAAt > 1:195875/1‑61 (MQ=255)
aCATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAAt < 2:195875/61‑1 (MQ=255)
aCATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTc < 1:78555/72‑1 (MQ=255)
aCATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTc > 2:78555/1‑72 (MQ=255)
aCATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTta > 1:681461/1‑121 (MQ=255)
aCATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTta < 2:681461/121‑1 (MQ=255)
aCATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCaa > 1:122984/1‑150 (MQ=255)
cATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCt < 2:629556/43‑1 (MQ=255)
cATATTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCt > 1:629556/1‑43 (MQ=255)
tatTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTa > 2:566101/1‑103 (MQ=255)
tatTCTGCCGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTa < 1:566101/103‑1 (MQ=255)
cGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCaa < 2:46980/150‑1 (MQ=255)
cGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCaa > 3:602249/1‑150 (MQ=255)
cGCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGAATCCTTCTACTTATTTTTATAACAGCATCCGTGATAATGAAAAGGAAAAGAAACGTCaa > 1:127667/1‑150 (MQ=255)
gCTAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAAt < 2:747793/150‑1 (MQ=255)
tAAACAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCctc > 1:23193/1‑61 (MQ=255)
aaCAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGt > 1:246835/1‑150 (MQ=255)
aCAATCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGtt > 4:104503/1‑150 (MQ=255)
aaTCCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATa > 4:385433/1‑48 (MQ=255)
ttCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATaaa < 1:685904/104‑1 (MQ=255)
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AAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCCGGCAACATTTATTGCCGCTTTTGTTTACATATTCTGCCGCTAAACAATTCCCCATTCCTGGCGTATATCTGGCTAACATTCATCAATGTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAATGAAAAGGCAAAGAAACGTCAATTTGTT > NC_000913_3_pae_tpiA/3853662‑3853950
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
