Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F141 I1 R1
|
21 |
114.5 |
4481172 |
94.2% |
4221264 |
126.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913_3_pae_tpiA |
4,033,218 |
G→T |
G25V (GGG→GTG) |
trkH → |
potassium transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913_3_pae_tpiA | 4,033,218 | 0 | G | T | 95.7%
| 399.4
/ 8.2
| 115 | G25V (GGG→GTG) | trkH | potassium transporter |
| Reads supporting (aligned to +/- strand): ref base G (2/3); new base T (57/53); total (59/56) |
| Fisher's exact test for biased strand distribution p-value = 6.74e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.09e-01 |
Only 100 of 115 total aligned reads displayed.
CGTGGTTCATTGCAATTGTTAGCGATTGAAGAATAATCCCCACTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGGGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCGAACTTAAATCCCGTGAGGGGTTTCTGATAGTG > NC_000913_3_pae_tpiA/4033071‑4033363
|
cGTGGTTCATTGCAATTGTTAGCGATTGAAGAATAATCCCCACTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGc < 2:890763/150‑1 (MQ=255)
cGTGGTTCATTGCAATTGTTAGCGATTGAAGAATAATCCCCACTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGc < 3:494664/150‑1 (MQ=255)
tGGTTCATTGCAATTGTTAGCGATTGAAGAATAATCCCCACTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTg < 1:921993/150‑1 (MQ=255)
aTTGCAATTGTTAGCGATTGAAGAATAATCCCCACTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCa > 1:765039/1‑150 (MQ=255)
gCAATTGTTAGCGATTGAAGAATAATCCCCACTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTc > 3:464032/1‑150 (MQ=255)
aGCGATTGAAGAATAATCCCCACTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCgg < 1:568043/150‑1 (MQ=255)
gATTGAAGAATAATCCCCACTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGAt > 4:175326/1‑150 (MQ=255)
aagaaTAATCCCCACTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGc > 4:758602/1‑150 (MQ=255)
gaaTAATCCCCACTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGa < 2:674006/142‑1 (MQ=255)
gaaTAATCCCCACTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGa > 1:674006/1‑142 (MQ=255)
aataatCCCCACTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCggg < 1:1189466/150‑1 (MQ=255)
taatCCCCACTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGcc > 2:473043/1‑150 (MQ=255)
ccACTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGGCCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCtt > 4:440984/1‑150 (MQ=255)
ccACTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGGGc < 3:813157/111‑1 (MQ=255)
aCTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCtttt < 1:74185/150‑1 (MQ=255)
aCTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCtttt < 2:455066/150‑1 (MQ=255)
cTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTa > 3:403739/1‑150 (MQ=255)
gTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCa < 3:758602/150‑1 (MQ=255)
gCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCt > 1:766006/1‑150 (MQ=255)
cAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCtt < 2:550059/150‑1 (MQ=255)
gAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCtttt < 4:121441/150‑1 (MQ=255)
aCTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCtttttt < 4:403739/150‑1 (MQ=255)
cTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCttttttt > 2:779619/1‑149 (MQ=255)
aaGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTc < 2:710022/150‑1 (MQ=255)
aGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCg > 3:139558/1‑150 (MQ=255)
ggAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGc > 2:65727/1‑150 (MQ=255)
gAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGcc > 2:523556/1‑150 (MQ=255)
gAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGcc > 2:844670/1‑150 (MQ=255)
gCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGcc > 4:367890/1‑150 (MQ=255)
gCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGcc > 3:672627/1‑150 (MQ=255)
gagaTGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCAtt < 2:518730/150‑1 (MQ=255)
gaTGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTgg < 1:65727/150‑1 (MQ=255)
aTGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCg < 1:1136553/95‑1 (MQ=255)
aTGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCg > 2:1136553/1‑95 (MQ=255)
tGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGGCCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGct < 3:440984/150‑1 (MQ=255)
gCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTg < 3:2069/146‑1 (MQ=255)
gCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGCACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTg > 4:2069/1‑146 (MQ=255)
tttCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATg < 4:312860/150‑1 (MQ=255)
ttCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATgg < 4:688470/94‑1 (MQ=255)
ttCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATgg > 3:688470/1‑94 (MQ=255)
cgcgCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCtg < 1:523556/150‑1 (MQ=255)
gcCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTgtgg > 1:267271/1‑150 (MQ=255)
ttACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGc < 3:367890/150‑1 (MQ=255)
aCCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCg > 1:635618/1‑150 (MQ=255)
ccGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATCCTCTGGTGGCCGaa > 2:156510/1‑150 (MQ=255)
aaTCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTAc < 2:957770/96‑1 (MQ=255)
aaTCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTAc > 1:957770/1‑96 (MQ=255)
tGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTa > 4:708852/1‑89 (MQ=255)
tGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTa < 3:708852/89‑1 (MQ=255)
actactGGTCATCTTATTTTCAGGGCCCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGaa > 1:550670/1‑150 (MQ=255)
tactGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTTCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAg > 4:177760/1‑150 (MQ=255)
tactGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAg > 3:398790/1‑150 (MQ=255)
tactGGTCATCTTATTCTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAg > 3:752814/1‑150 (MQ=255)
tactGGTCAACTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAg > 1:942119/1‑150 (MQ=255)
ctGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGc < 2:68230/150‑1 (MQ=255)
ctGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGc < 2:94/150‑1 (MQ=255)
tGGTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCg < 2:765039/150‑1 (MQ=255)
gTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATg < 1:518016/61‑1 (MQ=255)
gTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATg > 2:518016/1‑61 (MQ=255)
gTCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGACCCGCAAAGAGAAAGGCGaa > 1:430551/1‑150 (MQ=255)
gTCATCTTATTTTCAGGGACCATGATTATCCCTGGGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCGaa > 4:777868/1‑150 (MQ=255)
tCATCTTATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCGAAc > 3:824890/1‑150 (MQ=255)
ttATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTAcc < 2:963786/49‑1 (MQ=255)
ttATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTAcc > 1:963786/1‑49 (MQ=255)
ttATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTa < 2:1162556/73‑1 (MQ=255)
ttATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTa > 1:1162556/1‑73 (MQ=255)
ttATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAg > 2:943787/1‑78 (MQ=255)
ttATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAg < 1:943787/78‑1 (MQ=255)
ttATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGctc < 1:291971/107‑1 (MQ=255)
ttATTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCGAACTTaaa < 3:175326/150‑1 (MQ=255)
ttATTTTCAGGGACCATGATTATCCCTGGGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCGAACTTaaa < 3:777868/150‑1 (MQ=255)
aTTTTCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCGAACTTAAATc > 3:12499/1‑150 (MQ=255)
ttttCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGaaa > 4:483603/1‑135 (MQ=255)
ttttCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGaaa < 3:483603/135‑1 (MQ=255)
tttCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCtgtg > 2:1013220/1‑112 (MQ=255)
tttCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCtgtg < 1:1013220/112‑1 (MQ=255)
tttCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCGAACTTAAATccc < 1:822357/150‑1 (MQ=255)
ttCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAaga > 3:154520/1‑129 (MQ=255)
ttCAGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAaga < 4:154520/129‑1 (MQ=255)
aGGGACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCGAACTTAAATCCCGTGa > 3:638058/1‑150 (MQ=255)
ggACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATg < 1:1206878/101‑1 (MQ=255)
ggACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATg > 2:1206878/1‑101 (MQ=255)
atctcATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCGAACTTAAATCCCGTGAgg < 1:296525/146‑1 (MQ=255)
gACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAg > 1:80107/1‑67 (MQ=255)
gACCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAg < 2:80107/67‑1 (MQ=255)
aCCATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAg > 3:280602/1‑127 (MQ=255)
ccATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTgtgg < 1:1205735/104‑1 (MQ=255)
ccATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTgtgg > 2:1205735/1‑104 (MQ=255)
cATGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTg < 1:821944/89‑1 (MQ=255)
tGATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCGAACTTAAATCCCGTGAGGGGTTTc < 4:398790/150‑1 (MQ=255)
gATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCGAACTTAAATCCCGTGAGGGGttt > 2:236776/1‑148 (MQ=255)
gATTATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCGAACTTAAATCCCGTGAGGGGttt < 1:236776/148‑1 (MQ=255)
ttATCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAAAAAGGCGAACTTAAATCCCGTGAGGGGTTTCTGa < 2:267271/150‑1 (MQ=255)
aTCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCtg < 2:1218552/93‑1 (MQ=255)
aTCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCtg > 1:1218552/1‑93 (MQ=255)
aTCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCGAACTTAAATCCCGTGAGGGGTTTCTGATa < 2:550670/150‑1 (MQ=255)
aTCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCGAACTTAAATCCCGTGAGGGGTTTCTGATa < 4:752814/150‑1 (MQ=255)
tCCCTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCGAACTTAAATCCCGTGAGGGGTTTCTGATAg > 1:341875/1‑150 (MQ=255)
ccTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCGAACTTAAATCCCGTGAGGGGTTTCTGATAgtg < 4:464032/150‑1 (MQ=255)
ccTGTGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCGAACTTAAATCCCGTGAGGGGTTTCTGATAgtg < 4:672627/150‑1 (MQ=255)
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CGTGGTTCATTGCAATTGTTAGCGATTGAAGAATAATCCCCACTTCGTTTTGCAGAACTAAGGAAGCGGCAGAGATGCATTTTCGCGCCATTACCCGAATCGTTGGACTACTGGTCATCTTATTTTCAGGGACCATGATTATCCCTGGGCTGGTAGCACTCATCTACCGGGATGGAGCGGGCCGCGCTTTTACCCAGACCTTTTTTGTCGCCCTCGCCATTGGCTCTATGCTGTGGTGGCCGAACCGCAAAGAGAAAGGCGAACTTAAATCCCGTGAGGGGTTTCTGATAGTG > NC_000913_3_pae_tpiA/4033071‑4033363
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
