Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A24 F31 I1 R1
|
16 |
84.1 |
2897778 |
94.0% |
2723911 |
143.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913_3_pae_tpiA |
1,978,503 |
Δ776 bp |
|
insB1–insA |
insB1, insA |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913_3_pae_tpiA |
1978503 |
1979278 |
776 |
58 [1] |
[0] 60 |
insB1–insA |
insB1,insA |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913_3_pae_tpiA |
= 1978502 | 1 (0.010) | 55 (0.700) |
46/268 |
0.8 |
99.2% |
intergenic (‑305/+16) |
flhD/insB1 |
flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913_3_pae_tpiA |
1979279 = |
0 (0.000) | intergenic (‑64/‑474) |
insA/uspC |
IS1 repressor TnpA/universal stress protein |
GATK/CNVnator alignment
N/A
