Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F80 I1 R1
|
41 |
139.0 |
3144083 |
98.9% |
3109498 |
214.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,366,751 |
Δ295 bp |
IS5‑mediated |
yhcE–[yhcF] |
yhcE, [yhcF] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3365710–3366749 |
3367045 |
297–1336 |
52 [48] |
[0] 177 |
[insH‑10]–[yhcF] |
[insH‑10],yhcE,[yhcF] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3366750 | NA (NA) | 176 (1.270) |
94/426 |
0.1 |
100% |
noncoding (1/1195 nt) |
IS5 |
repeat region |
| ? | NC_000913 |
3367046 = |
0 (0.000) | coding (121/717 nt) |
yhcF |
DUF1120 domain‑containing protein YhcF |
GATK/CNVnator alignment
N/A
