Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F80 I1 R1
|
83 |
52.9 |
1240211 |
98.2% |
1217887 |
216.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,366,751 |
Δ295 bp |
IS5‑mediated |
yhcE–[yhcF] |
yhcE, [yhcF] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3365727–3366750 |
3367045 |
296–1319 |
14 [12] |
[0] 61 |
[insH‑10]–[yhcF] |
[insH‑10],yhcE,[yhcF] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3366750 | NA (NA) | 60 (1.130) |
49/430 |
0.1 |
100% |
noncoding (1/1195 nt) |
IS5 |
repeat region |
| ? | NC_000913 |
3367046 = |
0 (0.000) | coding (121/717 nt) |
yhcF |
DUF1120 domain‑containing protein YhcF |
GATK/CNVnator alignment
N/A
