Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F30 I1 R1	17	74.5	2526702	99.1%	2503961	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,560,828	G→T	intergenic (‑148/‑102)	yjiH ← / → kptA	Gate family protein YjiH/RNA 2'‑phosphotransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,560,828	0	G	T	100.0%	261.3 / NA	74	intergenic (‑148/‑102)	yjiH/kptA	Gate family protein YjiH/RNA 2'‑phosphotransferase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (34/40); total (34/40)

ATTGTTTTTTTGTGTTTGTGTGTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTGTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGATGGCAAAGTACAACGAAAAAGAGCTGGCGGAT  >  NC_000913/4560691‑4560962

aTTGTTTTTTTGTGTTTGTGTGTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCtttg                                                                                                                                      >  2:1212115/1‑140 (MQ=255)

aTTGTTTTTTTGTGTTTGTGTGTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCtttg                                                                                                                                      >  2:1038422/1‑140 (MQ=255)

aTTGTTTTTTTGTGTTTGTGTGTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCtttg                                                                                                                                      >  1:987973/1‑140 (MQ=255)

aTTGTTTTTTTGTGTTTGTGTGTTGCTTGAGCCAGGAAAACTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCtttg                                                                                                                                      >  1:958147/1‑140 (MQ=255)

  tGTTTTTTTGTGTTTGTGTGTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCtttgtg                                                                                                                                    >  1:159963/1‑140 (MQ=255)

     ttttttGTGTTTGTGTGTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGaa                                                                                                                                 <  1:709366/140‑1 (MQ=255)

      tttttGTGTTTGTGTGTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGaaa                                                                                                                                <  1:305088/140‑1 (MQ=255)

           gtgtttgtgtGTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGct                                                                                                                           <  1:1239525/140‑1 (MQ=255)

           gtgtttgtgtGTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGct                                                                                                                           <  2:159963/140‑1 (MQ=255)

           gtgtttgtgtGTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGct                                                                                                                           <  2:476592/140‑1 (MQ=255)

           gtgtttgtgtGTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGct                                                                                                                           <  1:1079760/140‑1 (MQ=255)

           gtgtttgtgtGTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGct                                                                                                                           <  1:1038422/140‑1 (MQ=255)

              tttgtgtGTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTg                                                                                                                        >  1:600806/1‑140 (MQ=255)

              tttgtgtGTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTg                                                                                                                        >  1:495788/1‑140 (MQ=255)

              tttgtgtGTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTg                                                                                                                        >  1:1016177/1‑140 (MQ=255)

                tgtgtgTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTgcg                                                                                                                      <  1:628940/140‑1 (MQ=255)

                tgtgtgTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTgcg                                                                                                                      <  1:650649/140‑1 (MQ=255)

                tgtgtgTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTgcg                                                                                                                      <  2:428137/140‑1 (MQ=255)

                tgtgtgTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTgcg                                                                                                                      <  1:23294/140‑1 (MQ=255)

                  tgtgtTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTgcg                                                                                                                      >  2:422105/1‑138 (MQ=255)

                  tgtgtTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTgcg                                                                                                                      <  1:422105/138‑1 (MQ=255)

                     gtTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGa                                                                                                                 <  1:20921/140‑1 (MQ=255)

                      ttGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAACTGCAAGTGTGGTTCTGGTTATCCGTTTTCTGCATAGCGGATAAATTACGCTCTGTGGAAAAGGCTCTGCGCAGGAt                                                                                                                >  2:628940/1‑140 (MQ=255)

                       tGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGAtt                                                                                                               <  1:798128/140‑1 (MQ=255)

                        gCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTgcg                                                                                                                      >  2:1181913/1‑132 (MQ=255)

                        gCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTgcg                                                                                                                      >  2:1090524/1‑132 (MQ=255)

                        gCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTgcg                                                                                                                      <  1:1181913/132‑1 (MQ=255)

                        gCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTgcg                                                                                                                      <  1:1090524/132‑1 (MQ=255)

                           tGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGct                                                                                                                           <  2:578786/124‑1 (MQ=255)

                           tGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGct                                                                                                                           >  1:578786/1‑124 (MQ=255)

                             aGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTg                                                                                                         >  2:1125615/1‑140 (MQ=255)

                                cAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGAtt                                                                                                               >  2:691637/1‑131 (MQ=255)

                                cAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGAtt                                                                                                               <  1:691637/131‑1 (MQ=255)

                                   gAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGaaa                                                                                                   >  2:267609/1‑140 (MQ=255)

                                        ttCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCa                                                                                              >  1:1108046/1‑140 (MQ=255)

                                          ccTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATa                                                                                            <  2:495788/140‑1 (MQ=255)

                                          ccTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATa                                                                                            <  2:600806/140‑1 (MQ=255)

                                             ggAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAAc                                                                                         >  1:112591/1‑140 (MQ=255)

                                                          cTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGa                                                                            <  1:667171/140‑1 (MQ=255)

                                                             aTCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACAt                                                                         >  2:940653/1‑140 (MQ=255)

                                                                aGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAg                                                                      <  1:1125615/140‑1 (MQ=255)

                                                                  ccATGCGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGTTTTGGGGAAAAGGCTCCGCTCAGGATTGAGCTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGta                                                                    >  2:28609/1‑140 (MQ=255)

                                                                    aTGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACAt                                                                         <  1:381640/133‑1 (MQ=255)

                                                                    aTGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACAt                                                                         >  2:381640/1‑133 (MQ=255)

                                                                    aTGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGtaaa                                                                  >  1:959091/1‑140 (MQ=255)

                                                                     tgtgGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGtaaat                                                                 >  1:100083/1‑140 (MQ=255)

                                                                     tgtgGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGtaaat                                                                 >  1:536914/1‑140 (MQ=255)

                                                                      gtgGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGtaaata                                                                >  1:1120493/1‑140 (MQ=255)

                                                                       tgGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGtaaataa                                                               >  2:131250/1‑140 (MQ=255)

                                                                         ggTATGGGGAAAATGCAAGTATGTTTCTGGCTTTGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATaaaa                                                             >  1:204246/1‑140 (MQ=255)

                                                                         ggTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATaaaa                                                             <  2:568440/140‑1 (MQ=255)

                                                                            aTGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACa                                                          >  2:1138214/1‑140 (MQ=255)

                                                                            aTGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACa                                                          >  2:802990/1‑140 (MQ=255)

                                                                             tGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAg                                                         >  1:533881/1‑140 (MQ=255)

                                                                              ggggAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGa                                                        <  2:100083/140‑1 (MQ=255)

                                                                               gggAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGaa                                                       >  2:782003/1‑140 (MQ=255)

                                                                                     aTGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCa                                                 <  2:1208092/140‑1 (MQ=255)

                                                                                             aTGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGaa                                         <  2:112591/140‑1 (MQ=255)

                                                                                                    tGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACgaga                                  <  1:374368/140‑1 (MQ=255)

                                                                                                    tGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACgaga                                  <  2:536914/140‑1 (MQ=255)

                                                                                                    tGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACgaga                                  <  2:533881/140‑1 (MQ=255)

                                                                                                     ggCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGAt                                 <  1:1212115/140‑1 (MQ=255)

                                                                                                      gCTTTGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGATg                                <  2:204246/140‑1 (MQ=255)

                                                                                                      gCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGATg                                >  2:732035/1‑140 (MQ=255)

                                                                                                      gCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGATg                                >  1:267566/1‑140 (MQ=255)

                                                                                                      gCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGATg                                >  1:543187/1‑140 (MQ=255)

                                                                                                      gCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAAAAGAAAATCCAGGGACGAAAACGAGATg                                >  1:1262518/1‑140 (MQ=255)

                                                                                                       cTATGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGATgg                               <  1:782003/140‑1 (MQ=255)

                                                                                                         aTGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATTAGTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGATGGCa                             <  1:267609/140‑1 (MQ=255)

                                                                                                          tGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGaaaa                                       <  2:365206/129‑1 (MQ=255)

                                                                                                          tGCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGaaaa                                       >  1:365206/1‑129 (MQ=255)

                                                                                                           gCGTTTTTTGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCACTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGATGGCaaa                           >  1:482397/1‑140 (MQ=255)

                                                                                                                ttttGCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGATGGCAAAGTACa                      <  2:1120493/140‑1 (MQ=255)

                                                                                                                    gCATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGATGGCAAAGTACAACGa                  <  1:1138214/140‑1 (MQ=255)

                                                                                                                     cATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGATGGCAAAGTa                        <  2:819183/133‑1 (MQ=255)

                                                                                                                     cATAGCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGATGGCAAAGTa                        >  1:819183/1‑133 (MQ=255)

                                                                                                                         gCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGATGGCAAAGTACaa                     >  1:176926/1‑132 (MQ=255)

                                                                                                                         gCGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGATGGCAAAGTACaa                     <  2:176926/132‑1 (MQ=255)

                                                                                                                          cGGAAAAATTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGATGGCAAAGTACAACGAAAAaga            >  2:1146424/1‑140 (MQ=255)

                                                                                                                               aaaTTACGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGATGGCAAAGTACAACGAAAAAGAGCTgg       <  2:1016177/140‑1 (MQ=255)

                                                                                                                                    aCGCTTTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGATGGCAAAGTACAACGAAAAAGAGCTGGCGGAt  >  2:733354/1‑140 (MQ=255)

ATTGTTTTTTTGTGTTTGTGTGTTGCTTGAGCCAGGAAAATTCCTGGAACTGAAAAACCTTATCAGCCATGTGGGTATGGGGAAAATGCAAGTATGTTTCTGGCTATGCGTTTTTTGCATAGCGGAAAAATTACGCTGTGTGGAAAAGGCTCTGCGCAGGATTGAGTTGCAGAAAATTCATAAACCAAGTGACAATGACATCAGTAAATAAAAACAGAAAATCCAGGGACGAAAACGAGATGGCAAAGTACAACGAAAAAGAGCTGGCGGAT  >  NC_000913/4560691‑4560962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A