Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A34 F30 I1 R1	27	158.7	5302006	99.4%	5270193	138.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,452,576	G→T	M2I (ATG→ATT)	ytfT →	galactofuranose ABC transporter putative membrane subunit YtfT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,452,576	0	G	T	100.0%	637.3 / NA	178	M2I (ATG→ATT)	ytfT	galactofuranose ABC transporter putative membrane subunit YtfT
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (93/85); total (93/85)

Only 100 of 179 total aligned reads displayed.

AACTGGAAGAGCTGGTGGGCTATGCCGATCGGGTGATTATCATGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATGCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCTGGCAGGTGGTGCTT  >  NC_000913/4452439‑4452711

 aCTGGAAGAGCTGGTGGGCTATGCCGATCGGGTGATTATCATGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCt                                                                                                                                      >  2:1269487/1‑140 (MQ=255)

     gAAGAGCTGGTGGGCTATGCCGATCGGGTGATTATCATGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGTGGCGTAAGGAGAACAGTGTGATTCCTCAAt                                                                                                                                  <  2:511312/140‑1 (MQ=255)

     gAAGAGCTGGTGGGCTATGCCGATCGGGTGATTATCATGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAAt                                                                                                                                  >  2:1195545/1‑140 (MQ=255)

     gAAGAGCTGGTGGGCTATGCCGATCGGGTGATTATCATGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAAt                                                                                                                                  <  1:1269487/140‑1 (MQ=255)

     gAAGAGCTGGTGGGCTATGCCGATCGGGTGATTATCATGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAAt                                                                                                                                  <  2:1802636/140‑1 (MQ=255)

     gAAGAGCTGGTGGGCTATGCCGATCGGGTGATTATCATGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAAt                                                                                                                                  >  1:1673191/1‑140 (MQ=255)

      aaGAGCTGGTGGGCTATGCCGATCGGGTGATTATCATGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAAtc                                                                                                                                 >  1:1587189/1‑140 (MQ=255)

           cTGGTGGGCTATGCCGATCGGGTGATTATCATGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTc                                                                                                                            >  1:1848548/1‑140 (MQ=255)

                     aTGCCGATCGGGTGATTATCATGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGacac                                                                                                                     >  2:1868500/1‑137 (MQ=255)

                      tGCCGATCGGGTGATTATCATGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACt                                                                                                                 >  1:1700270/1‑140 (MQ=255)

                           aTCGGGTGATTATCATGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGcc                                                                                                            >  2:2094500/1‑140 (MQ=255)

                             cGGGTGATTATCATGCGCGATCGCAAACAGGTGGCGGAGATGCCGCTGGCAGAGCTTTTCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCaa                                                                                                          >  2:1446785/1‑140 (MQ=255)

                                gTGATTATCATGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTa                                                                                                                >  1:1033642/1‑131 (MQ=255)

                                 tGATTATCATGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAg                                                                                                      >  1:828385/1‑140 (MQ=255)

                                 tGATTATCATGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAg                                                                                                      >  1:2071125/1‑140 (MQ=255)

                                  gATTATCATGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAgg                                                                                                     >  2:2558371/1‑140 (MQ=255)

                                          tGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGgcg                                                                                                   <  1:307549/134‑1 (MQ=255)

                                          tGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCg                                                                                             >  1:1532612/1‑140 (MQ=255)

                                          tGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCg                                                                                             <  2:1673191/140‑1 (MQ=255)

                                             gcgATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTg                                                                                          <  2:2071125/140‑1 (MQ=255)

                                             gcgATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTg                                                                                          >  2:1384052/1‑140 (MQ=255)

                                             gcgATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTg                                                                                          <  2:828385/140‑1 (MQ=255)

                                              cgATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTgg                                                                                         >  1:1630936/1‑140 (MQ=255)

                                              cgATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTgg                                                                                         <  1:1384052/140‑1 (MQ=255)

                                              cgATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTgg                                                                                         >  1:187741/1‑140 (MQ=255)

                                              cgATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTgg                                                                                         >  1:360211/1‑140 (MQ=255)

                                                 tCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTgg                                                                                         <  2:101554/137‑1 (MQ=255)

                                                 tCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTgg                                                                                         >  1:101554/1‑137 (MQ=255)

                                                 tCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCg                                                                                      <  2:1034837/140‑1 (MQ=255)

                                                 tCGCAAACAGGAGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGACGCTTTCGCTGGCCg                                                                                      >  2:198103/1‑140 (MQ=255)

                                                   gCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGAc                                                                                    <  2:1630936/140‑1 (MQ=255)

                                                     aaaCAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACgg                                                                                  <  1:364178/140‑1 (MQ=255)

                                                        cAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGa                                                                               <  2:1107404/140‑1 (MQ=255)

                                                           gTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACggg                                                                                 >  2:2034436/1‑135 (MQ=255)

                                                           gTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACggg                                                                                 <  1:2034436/135‑1 (MQ=255)

                                                           gTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACgg                                                                                  >  2:227638/1‑134 (MQ=255)

                                                           gTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGc                                                                            >  1:2248426/1‑140 (MQ=255)

                                                             ggCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCg                                                                          <  2:1700270/140‑1 (MQ=255)

                                                               cGGAGATCCCTCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCa                                                                        >  1:1464012/1‑140 (MQ=255)

                                                               cGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGa                                                                               <  2:322694/133‑1 (MQ=255)

                                                               cGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCa                                                                        <  2:360211/140‑1 (MQ=255)

                                                                ggAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAg                                                                       <  1:1995204/140‑1 (MQ=255)

                                                                     tCCCGCTGGCATAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGt                                                                  <  1:1975475/140‑1 (MQ=255)

                                                                     tCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGt                                                                  >  1:2082205/1‑140 (MQ=255)

                                                                     tCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGt                                                                  >  2:318573/1‑140 (MQ=255)

                                                                      cccGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTa                                                                 <  2:1806306/140‑1 (MQ=255)

                                                                        cGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGc                                                               <  1:1223811/140‑1 (MQ=255)

                                                                        cGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGc                                                               >  1:1699061/1‑140 (MQ=255)

                                                                        cGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGc                                                               <  2:2082205/140‑1 (MQ=255)

                                                                         gCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCa                                                              >  1:1782565/1‑140 (MQ=255)

                                                                         gCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCa                                                              <  1:2592187/140‑1 (MQ=255)

                                                                           tGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACt                                                            <  1:1269446/140‑1 (MQ=255)

                                                                             gCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTAt                                                          >  1:641579/1‑140 (MQ=255)

                                                                              cAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCa                                                                        <  1:1872314/125‑1 (MQ=255)

                                                                              cAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTAtt                                                         >  1:1174562/1‑140 (MQ=255)

                                                                              cAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTAtt                                                         <  1:244196/140‑1 (MQ=255)

                                                                              cAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTAtt                                                         >  2:1596444/1‑140 (MQ=255)

                                                                               agagCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTg                                                        >  1:2216407/1‑140 (MQ=255)

                                                                               agagCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTg                                                        >  1:480031/1‑140 (MQ=255)

                                                                                   cTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTgg                                                    <  2:1532612/140‑1 (MQ=255)

                                                                                    tttCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGt                                                   <  1:198103/140‑1 (MQ=255)

                                                                                       ccgttccgGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGtgct                                                >  1:1798396/1‑140 (MQ=255)

                                                                                          ttccgGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTgctgct                                             <  2:1464012/140‑1 (MQ=255)

                                                                                           tccgGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGctgctg                                            <  1:2331874/140‑1 (MQ=255)

                                                                                             cgGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGt                                          >  1:2430198/1‑140 (MQ=255)

                                                                                               gCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCg                                        <  1:1596444/140‑1 (MQ=255)

                                                                                                cGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCTGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGa                                       <  1:489508/140‑1 (MQ=255)

                                                                                                cGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGa                                       >  2:183413/1‑140 (MQ=255)

                                                                                                cGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGa                                       <  2:1643553/140‑1 (MQ=255)

                                                                                                        aaNGCNATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTTCGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTgg                               <  2:2193049/140‑1 (MQ=255)

                                                                                                        aaCGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTgg                               <  1:51568/140‑1 (MQ=255)

                                                                                                          cGCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTa                             >  2:1169802/1‑140 (MQ=255)

                                                                                                           gCCATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAg                            <  2:1552436/140‑1 (MQ=255)

                                                                                                             cATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGcc                          >  2:1527967/1‑140 (MQ=255)

                                                                                                             cATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGcc                          >  1:2610800/1‑140 (MQ=255)

                                                                                                             cATTGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGcc                          >  1:941806/1‑140 (MQ=255)

                                                                                                               ttGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGcccc                        <  1:231374/140‑1 (MQ=255)

                                                                                                               ttGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGcccc                        >  1:1583973/1‑140 (MQ=255)

                                                                                                               ttGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGcccc                        >  1:731142/1‑140 (MQ=255)

                                                                                                                tGCGGCGTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCg                       >  2:1250942/1‑140 (MQ=255)

                                                                                                                  cggcgTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCa                     <  2:480031/140‑1 (MQ=255)

                                                                                                                  cggcgTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCa                     <  2:2216407/140‑1 (MQ=255)

                                                                                                                    gcgTAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCAtt                   >  1:2169427/1‑140 (MQ=255)

                                                                                                                       tAAGGAGAACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCt                >  1:193399/1‑140 (MQ=255)

                                                                                                                           gagaACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCTGGCa            <  2:2610800/140‑1 (MQ=255)

                                                                                                                             gaACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCTGGCAgg          <  1:318573/140‑1 (MQ=255)

                                                                                                                             gaACAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCTGGCAgg          <  2:501987/140‑1 (MQ=255)

                                                                                                                              aaCAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCTGGCAggt         <  2:1977881/140‑1 (MQ=255)

                                                                                                                               aCAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCTGGCAggtg        <  2:941806/140‑1 (MQ=255)

                                                                                                                               aCAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCTGGCAggtg        <  2:276356/140‑1 (MQ=255)

                                                                                                                               aCAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCTGGCAggtg        <  2:2430809/140‑1 (MQ=255)

                                                                                                                               aCAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCTGGCAggtg        >  2:1299310/1‑140 (MQ=255)

                                                                                                                                cAGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCTGGCAggtgg       <  1:78608/140‑1 (MQ=255)

                                                                                                                                 aGTGTGATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCTGGCAggtggt      <  2:187741/140‑1 (MQ=255)

                                                                                                                                   tgtgATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCTGGCAggtgg       >  2:1591847/1‑137 (MQ=255)

                                                                                                                                   tgtgATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCTGGCAggtgg       <  2:645977/137‑1 (MQ=255)

                                                                                                                                   tgtgATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCTGGCAGGTGGTGc    >  1:2293477/1‑140 (MQ=255)

                                                                                                                                     tgATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCTGGCAGGTGGTGCtt  <  2:2430198/140‑1 (MQ=255)

                                                                                                                                     tgATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCTGGCAGGTGGTGCtt  >  2:447418/1‑140 (MQ=255)

                                                                                                                                     tgATTCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGAATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCTGGCAGGTGGTGCtt  >  2:1754175/1‑140 (MQ=255)

AACTGGAAGAGCTGGTGGGCTATGCCGATCGGGTGATTATCATGCGCGATCGCAAACAGGTGGCGGAGATCCCGCTGGCAGAGCTTTCCGTTCCGGCGATCATGAACGCCATTGCGGCGTAAGGAGAACAGTGTGATGCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGCACTATTGCTGGTGCTGCTGGTCGATAGCCTGGTAGCCCCGCATTTCTGGCAGGTGGTGCTT  >  NC_000913/4452439‑4452711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A