Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F30 I1 R1	25	145.3	4972014	99.0%	4922293	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	376,162	T→A	I235N (ATC→AAC)	mhpT →	3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	376,162	0	T	A	98.2%	390.4 / ‑1.9	112	I235N (ATC→AAC)	mhpT	3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter
Reads supporting (aligned to +/- strand): ref base T (1/1); new base A (54/56); total (55/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.03e-01

Only 100 of 113 total aligned reads displayed.

GGCGGTTTTCGCTGGCGAAAAACAGTCTGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGATCAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAGCTGCGTCCAGTA  >  NC_000913/376034‑376298

ggcggTTTTCGCTGGCGAAAAACAGTCTGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTAc                                                                                                                               >  2:1530544/1‑140 (MQ=255)

 gcggTTTTCGCTGGCGAAAAACAGTCTGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTAcc                                                                                                                              <  2:403750/140‑1 (MQ=255)

  cggTTTTCGCTGGCGAAAAACAGTCTGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCg                                                                                                                             >  1:1134879/1‑140 (MQ=255)

  cggTTTTCGCTGGCGAAAAACAGTCTGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCg                                                                                                                             <  1:88517/140‑1 (MQ=255)

    gTTTTCGCTGGCGAAAAACAGTCTGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCt                                                                                                                           <  1:960734/140‑1 (MQ=255)

            tGGCGAAAAACAGTCTGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTtgg                                                                                                                   <  2:2033775/140‑1 (MQ=255)

            tGGCGAAAAACAGTCTGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTtgg                                                                                                                   <  1:1366846/140‑1 (MQ=255)

            tGGCGAAAAACAGTCTGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTtgg                                                                                                                   <  1:1530544/140‑1 (MQ=255)

             ggCGAAAAACAGTCTGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTtggt                                                                                                                  <  2:1794985/140‑1 (MQ=255)

               cGAAAAACAGTCTGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTtggtgg                                                                                                                <  1:1719274/140‑1 (MQ=255)

                   aaaCAGTCTGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCa                                                                                                            <  2:237374/140‑1 (MQ=255)

                    aaCAGTCTGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCaa                                                                                                           <  2:787977/140‑1 (MQ=255)

                    aaCAGTCTGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCaa                                                                                                           <  1:211778/140‑1 (MQ=255)

                        gTCTGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGAt                                                                                                       >  1:63543/1‑140 (MQ=255)

                         tCTGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGAtt                                                                                                      <  1:1731830/140‑1 (MQ=255)

                           tGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTcc                                                                                                    <  2:897718/140‑1 (MQ=255)

                           tGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTcc                                                                                                    >  1:1613989/1‑140 (MQ=255)

                            gcgcCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCa                                                                                                   <  2:914038/140‑1 (MQ=255)

                             cgcCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGAtt                                                                                                      >  1:1422639/1‑136 (MQ=255)

                             cgcCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGAtt                                                                                                      <  2:1422639/136‑1 (MQ=255)

                                     cTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCa                                                                                          >  1:85969/1‑140 (MQ=255)

                                     cTGCATGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCa                                                                                          <  2:1794253/140‑1 (MQ=255)

                                      tGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAg                                                                                         >  2:2080462/1‑140 (MQ=255)

                                       gCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAgg                                                                                        <  2:2142696/140‑1 (MQ=255)

                                       gCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAgg                                                                                        >  1:1708751/1‑140 (MQ=255)

                                       gCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAgg                                                                                        >  1:1321278/1‑140 (MQ=255)

                                       gCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAgg                                                                                        >  1:2428355/1‑140 (MQ=255)

                                       gCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAgg                                                                                        >  2:2412445/1‑140 (MQ=255)

                                        cGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAggc                                                                                       <  2:512742/140‑1 (MQ=255)

                                        cGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAggc                                                                                       <  2:85969/140‑1 (MQ=255)

                                          tGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAggcgg                                                                                     >  2:900804/1‑140 (MQ=255)

                                           gCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAggcggt                                                                                    <  2:1613989/140‑2 (MQ=255)

                                               tATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAggg                                                                                >  1:970206/1‑140 (MQ=255)

                                                     cgcCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATg                                                                          >  2:1825837/1‑140 (MQ=255)

                                                      gcCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGt                                                                         >  2:1523688/1‑140 (MQ=255)

                                                          gAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGc                                                                     <  1:1311656/140‑1 (MQ=255)

                                                           aaaCGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGcc                                                                    >  1:2465062/1‑140 (MQ=255)

                                                           aaaCGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGcc                                                                    <  2:2386889/140‑1 (MQ=255)

                                                           aaaCGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGcc                                                                    <  1:2412445/140‑1 (MQ=255)

                                                           aaaCGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGCGATGTTTGcc                                                                    >  1:289982/1‑140 (MQ=255)

                                                              cGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTGCATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTg                                                                 <  2:580657/140‑1 (MQ=255)

                                                              cGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTg                                                                 <  2:1134879/140‑1 (MQ=255)

                                                                               ctgctgTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAg                                                <  2:1826364/140‑1 (MQ=255)

                                                                               ctgctgTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAg                                                >  2:2403272/1‑140 (MQ=255)

                                                                                 gctgTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCg                                              <  2:1384756/140‑1 (MQ=255)

                                                                                 gctgTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCg                                              <  2:970206/140‑1 (MQ=255)

                                                                                  ctgTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCgg                                             <  2:2009088/140‑1 (MQ=255)

                                                                                  ctgTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCgg                                             <  2:63543/140‑1 (MQ=255)

                                                                                    gtgGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGa                                           <  2:1321278/140‑1 (MQ=255)

                                                                                      ggTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACg                                         >  1:1452601/1‑140 (MQ=255)

                                                                                         tgtgTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAATAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAg                                                <  2:967935/130‑1 (MQ=255)

                                                                                            gtTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATg                                   >  2:1037260/1‑140 (MQ=255)

                                                                                            gtTATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATg                                   >  1:830620/1‑140 (MQ=255)

                                                                                             ttATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGggcgg                                                    >  2:1448972/1‑122 (MQ=255)

                                                                                             ttATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGggcgg                                                    <  1:1448972/122‑1 (MQ=255)

                                                                                             ttATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGt                                  <  1:1523688/140‑1 (MQ=255)

                                                                                             ttATTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGt                                  >  1:36874/1‑140 (MQ=255)

                                                                                               aTTTCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTg                                >  1:2049000/1‑140 (MQ=255)

                                                                                                tttCTTCACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTgg                               >  1:1312465/1‑140 (MQ=255)

                                                                                                 ttcttcACTCTGCTGGTGGTCTACATGTTGATCAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCgg                                             >  1:1716776/1‑125 (MQ=255)

                                                                                                 ttcttcACTCTGCTGGTGGTCTACATGTTGATCAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCgg                                             <  2:1716776/125‑1 (MQ=255)

                                                                                                 ttcttcACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTggg                              >  2:1172577/1‑140 (MQ=255)

                                                                                                 ttcttcACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTggg                              <  2:36874/140‑1 (MQ=255)

                                                                                                     tcACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCa                          >  1:434802/1‑140 (MQ=255)

                                                                                                     tcACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCa                          >  2:468134/1‑140 (MQ=255)

                                                                                                     tcACTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCa                          >  2:567599/1‑140 (MQ=255)

                                                                                                       aCTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGgcg                            >  1:1210712/1‑136 (MQ=255)

                                                                                                       aCTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGgcg                            <  2:1210712/136‑1 (MQ=255)

                                                                                                       aCTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCAtt                        <  1:1266189/140‑1 (MQ=255)

                                                                                                       aCTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCAtt                        >  2:1908625/1‑140 (MQ=255)

                                                                                                       aCTCTGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCAtt                        <  1:68922/140‑1 (MQ=255)

                                                                                                        ctctGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCa                          <  2:1495527/137‑1 (MQ=255)

                                                                                                        ctctGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCa                          >  1:1495527/1‑137 (MQ=255)

                                                                                                         tctGCTGGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGa                      <  1:2100692/140‑1 (MQ=255)

                                                                                                          ctgctgGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGAt                     >  1:1678080/1‑140 (MQ=255)

                                                                                                            gctgGTGGTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATgg                   >  2:1110192/1‑140 (MQ=255)

                                                                                                              tggtggTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGAt                 <  2:1678080/140‑1 (MQ=255)

                                                                                                              tggtggTCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGAt                 <  2:2465062/140‑1 (MQ=255)

                                                                                                                gtggtCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATaa               >  1:758034/1‑140 (MQ=255)

                                                                                                                gtggtCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATaa               >  2:1696582/1‑140 (MQ=255)

                                                                                                                gtggtCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATaa               >  1:1964526/1‑140 (MQ=255)

                                                                                                                   gtCTGCATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAg              <  1:759471/138‑1 (MQ=255)

                                                                                                                   gtCTGCATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAg              >  2:759471/1‑138 (MQ=255)

                                                                                                                   gtCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAGCt            <  1:567599/140‑1 (MQ=255)

                                                                                                                    tCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAGCTg           <  1:1903980/140‑1 (MQ=255)

                                                                                                                    tCTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAGCTg           <  1:1363919/140‑1 (MQ=255)

                                                                                                                     cTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGAt                 <  1:1551198/133‑1 (MQ=255)

                                                                                                                     cTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAGCTGc          >  2:1325195/1‑140 (MQ=255)

                                                                                                                     cTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAGCTGc          <  1:1696582/140‑1 (MQ=255)

                                                                                                                     cTACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAGCTGc          >  2:897284/1‑140 (MQ=255)

                                                                                                                      tACATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAGCTGCg         <  1:1825837/140‑1 (MQ=255)

                                                                                                                       aCATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAGCTGCGt        >  2:575993/1‑140 (MQ=255)

                                                                                                                       aCATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAGCTGCGt        >  2:1909629/1‑140 (MQ=255)

                                                                                                                        cATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAGCTGCGTc       >  2:529801/1‑140 (MQ=255)

                                                                                                                        cATGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAGCTGCGTc       <  1:1909629/140‑1 (MQ=255)

                                                                                                                         aTGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAGCTGCGTcc      <  1:575993/140‑1 (MQ=255)

                                                                                                                         aTGTTGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAGCTGCGTcc      <  2:1964526/140‑1 (MQ=255)

                                                                                                                             tGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGAt                 <  2:1054532/125‑1 (MQ=255)

                                                                                                                             tGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAg              <  1:2231720/128‑1 (MQ=255)

                                                                                                                             tGAACAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAGCTGCGTCCAGTa  >  1:1587836/1‑140 (MQ=255)

GGCGGTTTTCGCTGGCGAAAAACAGTCTGCGCCACCACTGCGTGCCTTATTTGCGCCAGAAACGGCAACCGCGACGCTGCTGCTGTGGTTGTGTTATTTCTTCACTCTGCTGGTGGTCTACATGTTGATCAACTGGCTACCGCTACTTTTGGTGGAGCAAGGATTCCAGCCATCGCAGGCGGCAGGGGTGATGTTTGCCCTGCAAATGGGGGCGGCAAGCGGGACGTTAATGTTGGGCGCATTGATGGATAAGCTGCGTCCAGTA  >  NC_000913/376034‑376298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A