Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 169 80.7 2736954 99.0% 2709584 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,629,055 A→G F490L (TTC→CTC)  ettA ← energy‑dependent translational throttle protein EttA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,629,0550AG100.0% 253.6 / NA 70F490L (TTC→CTC) ettAenergy‑dependent translational throttle protein EttA
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (39/31);  total (39/31)

TTGTACTCTTCGTACTCGGTAAAGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAACTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGCCAGATGCAGACGACCGCGCTCACCACCGGAGAGT  >  NC_000913/4628922‑4629191
                                                                                                                                     |                                                                                                                                        
ttGTACTCTTCGTACTCGGTAAAGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCcag                                                                                                                                    >  1:249807/1‑140 (MQ=255)
 tGTACTCTTCGTACTCGGTAAAGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCcagc                                                                                                                                   <  1:1338688/140‑1 (MQ=255)
  gTACTCTTCGTACTCGGTAAAGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCcagca                                                                                                                                  >  2:869259/1‑140 (MQ=255)
        ttCGTACTCGGTAAAGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACTATCGCACAGCCCGGGAGCTCCAGCAGGGCGt                                                                                                                            >  1:1062652/1‑140 (MQ=255)
        ttCGTACTCGGTAAAGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGt                                                                                                                            >  2:1123581/1‑140 (MQ=255)
        ttCGTACTCGGTAAAGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGt                                                                                                                            >  1:296490/1‑140 (MQ=255)
              cTCGGTAAAGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCa                                                                                                                      <  1:869259/140‑1 (MQ=255)
               tCGGTAAAGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAg                                                                                                                     <  2:290188/140‑1 (MQ=255)
                cGGTAAAGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAgc                                                                                                                    <  1:231728/140‑1 (MQ=255)
                 ggTAAAGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAgcg                                                                                                                   >  2:410524/1‑140 (MQ=255)
                  gTAAAGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAgcgc                                                                                                                  >  2:922963/1‑140 (MQ=255)
                  gTAAAGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAgcgc                                                                                                                  >  2:371386/1‑140 (MQ=255)
                     aaGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAgcgcgcg                                                                                                               <  2:972965/140‑1 (MQ=255)
                     aaGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAgcgcgcg                                                                                                               <  2:22654/140‑1 (MQ=255)
                      aGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAgcgcgcgc                                                                                                              <  2:296490/140‑1 (MQ=255)
                       gTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCa                                                                                                             <  2:1076782/140‑1 (MQ=255)
                        ttACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAg                                                                                                            <  2:49604/140‑1 (MQ=255)
                         tACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAgg                                                                                                           <  1:371386/140‑1 (MQ=255)
                         tACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAgg                                                                                                           <  1:922963/140‑1 (MQ=255)
                         tACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAgg                                                                                                           <  1:38233/140‑1 (MQ=255)
                         tACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAgg                                                                                                           <  1:82728/140‑1 (MQ=255)
                          aCCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAggg                                                                                                          >  2:338605/1‑140 (MQ=255)
                           ccTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGt                                                                                                         >  1:729760/1‑140 (MQ=255)
                                  agaaCTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCg                                                                                                     <  1:233411/137‑1 (MQ=255)
                                  agaaCTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCg                                                                                                     >  2:233411/1‑137 (MQ=255)
                                      cTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGGTAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTTCAGCGCGCGCAGGGTTTCGATATcc                                                                                               >  1:177812/1‑139 (MQ=255)
                                      cTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGGTAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTTCAGCGCGCGCAGGGTTTCGATATcc                                                                                               <  2:177812/139‑1 (MQ=255)
                                                     aTCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTggttggtt                                                                               >  2:1003767/1‑140 (MQ=255)
                                                         tGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTtcgtc                                                                           <  2:729760/140‑1 (MQ=255)
                                                          ggTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTtcgtcg                                                                          >  2:1171899/1‑140 (MQ=255)
                                                          ggTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTtcgtcg                                                                          >  2:1124475/1‑140 (MQ=255)
                                                               tCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGagcag                                                                     >  1:169343/1‑140 (MQ=255)
                                                               tCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGagcag                                                                     >  1:1270726/1‑140 (MQ=255)
                                                               tCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGagcag                                                                     >  1:881576/1‑140 (MQ=255)
                                                               tCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGagcag                                                                     >  1:337217/1‑140 (MQ=255)
                                                                       gtgCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGt                                                             <  1:1003767/140‑1 (MQ=255)
                                                                        tgCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGtt                                                            >  2:1246913/1‑140 (MQ=255)
                                                                         gCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCATCAGCATGTTg                                                           >  2:838233/1‑140 (MQ=255)
                                                                         gCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTg                                                           >  1:249332/1‑140 (MQ=255)
                                                                         gCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTg                                                           >  2:468710/1‑140 (MQ=255)
                                                                          cGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGagca                                                                      >  1:530854/1‑128 (MQ=255)
                                                                          cGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGagca                                                                      <  2:530854/128‑1 (MQ=255)
                                                                          cGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTgc                                                          >  1:84309/1‑140 (MQ=255)
                                                                          cGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTgc                                                          >  2:670276/1‑140 (MQ=255)
                                                                              gCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTgccgcc                                                      >  1:619957/1‑140 (MQ=255)
                                                                                  tACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAAcc                                                  >  1:384150/1‑140 (MQ=255)
                                                                                      gTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTgccg                                                        <  2:117534/130‑1 (MQ=255)
                                                                                      gTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTgccg                                                        >  1:117534/1‑130 (MQ=255)
                                                                                      gTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTgca                                              <  2:60162/140‑1 (MQ=255)
                                                                                       tCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTgcag                                             >  2:873736/1‑140 (MQ=255)
                                                                                            gAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCACAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCt                                        >  1:1097739/1‑140 (MQ=255)
                                                                                                cAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGCTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGc                                    <  2:189628/140‑1 (MQ=255)
                                                                                                 aaCGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGcc                                   >  2:1086546/1‑140 (MQ=255)
                                                                                                   cGGTCGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGCCAg                                 <  1:410524/140‑1 (MQ=255)
                                                                                                       cGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCt                                        <  1:705204/129‑1 (MQ=255)
                                                                                                       cGTGCGAGATAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCt                                        >  2:705204/1‑129 (MQ=255)
                                                                                                               aTAACCATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGCCAGATGCAGACGAcc                     <  1:1086546/140‑1 (MQ=255)
                                                                                                                tAACCATCGCACGGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGCCAGATGCAGACGACcg                    >  1:22536/1‑140 (MQ=255)
                                                                                                                    cATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGCCAGATGCAGACGACCGCGCt                <  1:1246913/140‑1 (MQ=255)
                                                                                                                    cATCGCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGCCAGATGCAGACGACCGCGCt                <  2:84309/140‑1 (MQ=255)
                                                                                                                        gctcaGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCTCAGTGTTTCGATATCCAGGTCGGTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGCCAGATGCAGACGACCGCGCTcacc            >  2:864443/4‑140 (MQ=255)
                                                                                                                        gCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGCCAGATGCAGACGACCGCGCTcacc            >  2:1344421/1‑140 (MQ=255)
                                                                                                                        gCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGCCAGATGCAGACGACCGCGCTcac             <  2:37366/139‑1 (MQ=255)
                                                                                                                        gCACAGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGCCAGATGCAGACGACCGCGCTcac             >  1:37366/1‑139 (MQ=255)
                                                                                                                         cacaGCCCGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGCCAGATGCAGACGACCGCGCTcacca           <  2:1062652/140‑1 (MQ=255)
                                                                                                                              cccGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGCCAGATGCAGACGACCGCGCTCACCACCGga      <  2:619957/140‑1 (MQ=255)
                                                                                                                              cccGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGCCAGATGCAGACGACCGCGCTCACCACCGga      <  1:468710/140‑1 (MQ=255)
                                                                                                                              cccGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGCCAGATGCAGACGACCGCGCTCACCACCGga      >  1:526716/1‑140 (MQ=255)
                                                                                                                              cccGGGAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGCCAGATGCAGACGACCGCGCTCACCACCGga      >  1:980759/1‑140 (MQ=255)
                                                                                                                                  ggAGCTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGCCAGATGCAGACGACCGCGCTCACCACCGGAGAGt  <  1:670276/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                        
TTGTACTCTTCGTACTCGGTAAAGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATCCAGAATGTGCGTGGCGATACGGTCGAGGAACCAACGGTCGTGCGAGATAACCATCGCACAGCCCGGGAACTCCAGCAGGGCGTTTTCCAGCGCGCGCAGGGTTTCGATATCCAGGTCGTTGGTTGGTTCGTCGAGCAGCAGCATGTTGCCGCCAACCTGCAGCAGCTTCGCCAGATGCAGACGACCGCGCTCACCACCGGAGAGT  >  NC_000913/4628922‑4629191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A