Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F28 I1 R1
|
228 |
65.7 |
2434974 |
91.7% |
2232871 |
138.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
4,631,762 |
Δ12 bp |
coding (1030‑1041/1938 nt) |
slt → |
soluble lytic murein transglycosylase |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
4631762 |
4631773 |
12 |
66 [0] |
[0] 66 |
slt |
soluble lytic murein transglycosylase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 4631761 | 0 (0.000) | 65 (1.000) |
48/270 |
0.2 |
100% |
coding (1029/1938 nt) |
slt |
soluble lytic murein transglycosylase |
| ? | NC_000913 |
4631774 = |
0 (0.000) | coding (1042/1938 nt) |
slt |
soluble lytic murein transglycosylase |
GATK/CNVnator alignment
N/A
