Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	164	66.7	2276140	99.1%	2255654	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,320,534	C→T	L360L (CTG→CTA)	yhbX ←	putative hydrolase, inner membrane

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,320,534	0	C	T	100.0%	365.1 / NA	101	L360L (CTG→CTA)	yhbX	putative hydrolase, inner membrane
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (55/46); total (55/46)

Only 100 of 101 total aligned reads displayed.

CAAACTATCTGTGTAATGAATGGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATCAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATACTGGTAACTGCTGTACCATTCTGCCGAA  >  NC_000913/3320405‑3320667

cAAACTATCTGTGTAATGAATGGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCtttt                                                                                                                             >  2:715996/1‑140 (MQ=255)

   aCTATCTGTGTAATGAATGGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTtgct                                                                                                                          <  1:715996/140‑1 (MQ=255)

        cTGTGTAATGAATGGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTa                                                                                                                     <  2:931447/140‑1 (MQ=255)

         tgtgTAATGAATGGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTAt                                                                                                                    >  2:76250/1‑140 (MQ=255)

          gtgtAATGAATGGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTAtt                                                                                                                   <  2:1055942/140‑1 (MQ=255)

             tAATGAATGGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTg                                                                                                                >  2:937145/1‑140 (MQ=255)

              aatgaatgGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTAttt                                                                                                                  >  1:1006782/1‑137 (MQ=255)

              aatgaatgGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTAttt                                                                                                                  <  2:1006782/137‑1 (MQ=255)

              aatgaatgGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGc                                                                                                               <  1:19012/140‑1 (MQ=255)

                 gaatgGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGt                                                                                                            >  1:122735/1‑140 (MQ=255)

                  aatgGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTa                                                                                                           <  2:894938/140‑1 (MQ=255)

                   atgGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTaa                                                                                                          <  1:76250/140‑1 (MQ=255)

                   atgGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTaa                                                                                                          >  2:342343/1‑140 (MQ=255)

                     ggAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATg                                                                                                        >  1:1104399/1‑140 (MQ=255)

                     ggAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATg                                                                                                        >  1:886716/1‑140 (MQ=255)

                     ggAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATg                                                                                                        >  1:715641/1‑140 (MQ=255)

                     ggAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATg                                                                                                        >  2:250925/1‑140 (MQ=255)

                     ggAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATg                                                                                                        >  2:544148/1‑140 (MQ=255)

                       aGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCt                                                                                                      >  2:116422/1‑140 (MQ=255)

                       aGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCt                                                                                                      <  1:1049411/140‑1 (MQ=255)

                         ttGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTg                                                                                                    >  2:1099259/1‑140 (MQ=255)

                              aTAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATa                                                                                               >  1:53538/1‑140 (MQ=255)

                                 gCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATTGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATg                                                                                                        <  2:704605/128‑1 (MQ=255)

                                 gCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATg                                                                                                        >  1:704605/1‑128 (MQ=255)

                                 gCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAAt                                                                                            >  2:929761/1‑140 (MQ=255)

                                    ggCATCCTGATCGTCCTGCGGTTGAAACACGGCGTTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCg                                                                                         <  2:611756/140‑1 (MQ=255)

                                      cATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCgg                                                                                        >  1:150854/1‑139 (MQ=255)

                                      cATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCgg                                                                                        <  2:150854/139‑1 (MQ=255)

                                      cATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGc                                                                                       >  2:453569/1‑140 (MQ=255)

                                      cATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGc                                                                                       >  1:1128284/1‑140 (MQ=255)

                                      cATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGc                                                                                       >  1:232170/1‑140 (MQ=255)

                                      cATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGc                                                                                       >  2:120530/1‑140 (MQ=255)

                                      cATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGc                                                                                       >  2:231999/1‑140 (MQ=255)

                                      cATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGc                                                                                       >  1:346073/1‑140 (MQ=255)

                                      cATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGc                                                                                       >  2:501436/1‑140 (MQ=255)

                                             aTCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGcaacaaca                                                                                >  2:376748/1‑140 (MQ=255)

                                               cGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAAt                                                                              >  2:264462/1‑140 (MQ=255)

                                               cGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAAt                                                                              <  2:1117148/140‑1 (MQ=255)

                                               cGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAAt                                                                              >  2:795554/1‑140 (MQ=255)

                                                 tCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCg                                                                                         <  2:771288/127‑1 (MQ=255)

                                                 tCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCg                                                                                         >  1:771288/1‑127 (MQ=255)

                                                  ccTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATtca                                                                           >  2:722457/1‑140 (MQ=255)

                                                   cTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATtcat                                                                          >  2:247644/1‑140 (MQ=255)

                                                   cTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATtcat                                                                          >  2:10409/1‑140 (MQ=255)

                                                   cTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATtcat                                                                          >  2:1025705/1‑140 (MQ=255)

                                                    tGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATtcatc                                                                         <  2:962382/140‑1 (MQ=255)

                                                      cGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGcaacaacaa                                                                               <  1:371209/132‑1 (MQ=255)

                                                      cGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGcaacaacaa                                                                               >  2:371209/1‑132 (MQ=255)

                                                       ggTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCaaa                                                                      <  2:886716/140‑1 (MQ=255)

                                                       ggTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCaaa                                                                      <  1:1025705/140‑1 (MQ=255)

                                                        gTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCaa                                                                       <  2:1030927/138‑1 (MQ=255)

                                                        gTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCaa                                                                       >  1:1030927/1‑138 (MQ=255)

                                                         ttGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATc                                                                    <  1:116422/140‑1 (MQ=255)

                                                           gAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCct                                                                  <  1:376748/140‑1 (MQ=255)

                                                           gAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCct                                                                  <  1:231999/140‑1 (MQ=255)

                                                           gAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCct                                                                  <  1:101404/140‑1 (MQ=255)

                                                            aaaCACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCctc                                                                 >  2:816334/1‑140 (MQ=255)

                                                            aaaCACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCct                                                                  <  1:1007185/139‑1 (MQ=255)

                                                            aaaCACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCct                                                                  >  2:1007185/1‑139 (MQ=255)

                                                             aaCACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCctct                                                                <  1:816334/140‑1 (MQ=255)

                                                             aaCACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCctct                                                                >  1:455160/1‑140 (MQ=255)

                                                                acGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGAc                                                             <  1:1099259/140‑1 (MQ=255)

                                                                acGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGAc                                                             <  1:544148/140‑1 (MQ=255)

                                                                 cGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACa                                                            <  2:53538/140‑1 (MQ=255)

                                                                   gcgcTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATa                                                          >  1:856018/1‑140 (MQ=255)

                                                                    cgcTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATaa                                                         <  1:929761/140‑1 (MQ=255)

                                                                      cTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAAc                                                       <  1:10409/140‑1 (MQ=255)

                                                                              cGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCa                                               >  1:710268/1‑140 (MQ=255)

                                                                              cGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCa                                               >  2:1037003/1‑140 (MQ=255)

                                                                                   aGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGgcg                                          <  1:250925/140‑1 (MQ=255)

                                                                                   aGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGgcg                                          >  1:1099017/1‑140 (MQ=255)

                                                                                   aGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGgcg                                          >  1:627216/1‑140 (MQ=255)

                                                                                     gcgcTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGgcgcg                                        <  1:501436/140‑1 (MQ=255)

                                                                                     gcgcTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGgcgcg                                        >  1:879327/1‑140 (MQ=255)

                                                                                     gcgcTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGgcgcg                                        <  1:722457/140‑1 (MQ=255)

                                                                                     gcgcTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGgcgcg                                        <  2:627216/140‑1 (MQ=255)

                                                                                          aCAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATgg                                   <  2:346073/140‑1 (MQ=255)

                                                                                          aCAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATgg                                   <  1:795554/140‑1 (MQ=255)

                                                                                            aaGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCg                                 <  1:599593/140‑1 (MQ=255)

                                                                                            aaGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCg                                 <  2:715641/140‑1 (MQ=255)

                                                                                               ccGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATa                              <  1:120530/140‑1 (MQ=255)

                                                                                                cGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATAc                             >  2:871302/1‑140 (MQ=255)

                                                                                                cGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATAc                             >  2:399485/1‑140 (MQ=255)

                                                                                                cGGTTCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATAc                             >  2:1043087/1‑140 (MQ=255)

                                                                                                   ttCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATACTgg                          >  1:99910/1‑140 (MQ=255)

                                                                                                   ttCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATACTgg                          >  2:210327/1‑140 (MQ=255)

                                                                                                    tCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATACTGGt                         <  2:856018/140‑1 (MQ=255)

                                                                                                    tCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATACTGGt                         <  2:1099017/140‑1 (MQ=255)

                                                                                                    tCATGGCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATACTGGt                         <  2:455160/140‑1 (MQ=255)

                                                                                                        ggCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATACTGGTAAct                     >  2:477669/1‑140 (MQ=255)

                                                                                                         gCTTCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATACTGGTAActg                    <  2:1128284/140‑1 (MQ=255)

                                                                                                            tCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATACTGGTAActgctg                 <  1:453569/140‑1 (MQ=255)

                                                                                                            tCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATACTGGTAActgctg                 >  1:449971/1‑140 (MQ=255)

                                                                                                            tCCATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATACTGGTAActgctg                 >  1:64187/1‑140 (MQ=255)

                                                                                                             ccATTTAAATGAAGAACAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATACTGGTAACTGCTGt                >  2:675227/1‑140 (MQ=255)

                                                                                                                        aagaaCAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATACTGGTAACTGCTGTACCATTCTGcc     <  1:937145/140‑1 (MQ=255)

                                                                                                                          gaaCAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATACTGGTAACTGCTGTACCATTCTGCCGa   >  1:793198/1‑140 (MQ=255)

                                                                                                                          gaaCAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATACTGGTAACTGCTGTACCATTCTGCCGa   >  1:264661/1‑140 (MQ=255)

                                                                                                                           aaCAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATACTGGTAACTGCTGTACCATTCTGCCGaa  >  2:860266/1‑140 (MQ=255)

                                                                                                                           aaCAATTAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATACTGGTAACTGCTGTACCATTCTGCCGaa  <  2:122735/140‑1 (MQ=255)

CAAACTATCTGTGTAATGAATGGAGTTGTCATAGCAGGCATCCTGATCGTCCTGCGGTTGAAACACGGCGCTGGATTGCGGATAGGCGCTACAAGCCGGTTCATGGCTTCCATTTAAATGAAGAACAATCAGTTTCTTTTGCTGCGTATTTTGCTGTAATGCTTGCGATAAATGCGGCAACAACAATTCATCAAATCCTCTGACATAAACTGTTTCCATGGCGCGCATGGCGATACTGGTAACTGCTGTACCATTCTGCCGAA  >  NC_000913/3320405‑3320667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A