Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A41 F30 I1 R1 16 110.2 3709832 99.4% 3687573 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,679,846 C→A P143Q (CCG→CAG)  kdgK → 2‑dehydro‑3‑deoxygluconokinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,679,8460CA97.9% 321.1 / 0.4 94P143Q (CCG→CAG) kdgK2‑dehydro‑3‑deoxygluconokinase
Reads supporting (aligned to +/- strand):  ref base C (1/1);  new base A (51/41);  total (52/42)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.31e-01

ACGTTCTACTACTGGCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCCGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGACACAGCAGGTGTACCAACAAAT  >  NC_000913/3679713‑3679978
                                                                                                                                     |                                                                                                                                    
aCGTTCTACTACTGGCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAg                                                                                                                                >  2:865040/1‑140 (MQ=255)
       actactGGCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGaa                                                                                                                         >  1:916008/1‑140 (MQ=255)
       actactGGCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGaa                                                                                                                         <  1:1577701/140‑1 (MQ=255)
           ctGGCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAgc                                                                                                                     >  2:1010472/1‑140 (MQ=255)
           ctGGCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAgc                                                                                                                     >  2:478181/1‑140 (MQ=255)
           ctGGCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAgc                                                                                                                     >  2:1492851/1‑140 (MQ=255)
            tGGCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAgct                                                                                                                    <  2:213418/140‑1 (MQ=255)
            tGGCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAgct                                                                                                                    <  2:1746569/140‑1 (MQ=255)
            tGGCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAgct                                                                                                                    >  2:569361/1‑140 (MQ=255)
              gCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAgctgc                                                                                                                  >  2:332945/1‑140 (MQ=255)
              gCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAgctgc                                                                                                                  >  2:1713096/1‑140 (MQ=255)
              gCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAgctgc                                                                                                                  >  2:1421930/1‑140 (MQ=255)
              gCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAgctgc                                                                                                                  >  2:1340040/1‑140 (MQ=255)
              gCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAgctgc                                                                                                                  >  2:1089909/1‑140 (MQ=255)
              gCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAgct                                                                                                                    <  2:1028571/138‑1 (MQ=255)
              gCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAgct                                                                                                                    <  2:100174/138‑1 (MQ=255)
              gCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAgct                                                                                                                    >  1:100174/1‑138 (MQ=255)
              gCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAgct                                                                                                                    >  1:1028571/1‑138 (MQ=255)
                ggAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCCGACCAGCCGCGAAAAGCTGCtt                                                                                                                >  1:971883/1‑140 (MQ=255)
                ggAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCtt                                                                                                                >  1:1553577/1‑140 (MQ=255)
                ggAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGA‑TATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCttt                                                                                                               >  2:532715/1‑140 (MQ=255)
                       aGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCctgc                                                                                                         >  2:579992/1‑140 (MQ=255)
                            ccgccAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTgcgc                                                                                                    >  2:38555/1‑140 (MQ=255)
                            ccgccAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTgcgc                                                                                                    >  2:547097/1‑140 (MQ=255)
                               ccAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGaa                                                                                                 <  2:501095/140‑1 (MQ=255)
                                  aaTTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGc                                                                                              <  1:1834051/140‑1 (MQ=255)
                                      ctggctggAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCcgcg                                                                                          <  1:1089909/140‑1 (MQ=255)
                                        ggctggAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGcc                                                                                        <  2:1327482/140‑1 (MQ=255)
                                         gctggAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCa                                                                                       >  2:1811651/1‑140 (MQ=255)
                                              agagTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGcc                                                                                        <  1:591837/134‑1 (MQ=255)
                                              agagTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGcc                                                                                        >  2:591837/1‑134 (MQ=255)
                                              agagTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAAcggc                                                                                  >  1:1268046/1‑140 (MQ=255)
                                                    aGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGaaaa                                                                            >  1:1521278/1‑140 (MQ=255)
                                                     gCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCCGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAg                                                                           <  2:971883/140‑1 (MQ=255)
                                                     gCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAg                                                                           <  1:1111494/140‑1 (MQ=255)
                                                         tCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGAt                                                                       >  2:1523347/1‑140 (MQ=255)
                                                         tCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGAt                                                                       >  1:565363/1‑140 (MQ=255)
                                                         tCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGAt                                                                       >  1:980609/1‑140 (MQ=255)
                                                         tCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGAt                                                                       >  2:1632562/1‑140 (MQ=255)
                                                          cTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGAtt                                                                      >  2:1784835/1‑140 (MQ=255)
                                                           tGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGAttt                                                                     >  1:903945/1‑140 (MQ=255)
                                                           tGCGGCGATTTGCGAAGAGCTGGCGAATTTCGA‑TATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGAtttt                                                                    <  1:532715/140‑1 (MQ=255)
                                                            gcggcgATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGAtttt                                                                    >  2:1588786/1‑140 (MQ=255)
                                                            gcggcgATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGAtttt                                                                    <  2:1794018/140‑1 (MQ=255)
                                                             cggcgATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTc                                                                   <  2:1062099/140‑1 (MQ=255)
                                                              ggcgATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCg                                                                  <  1:1421930/140‑1 (MQ=255)
                                                              ggcgATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCg                                                                  >  2:255238/1‑140 (MQ=255)
                                                                cgATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGAc                                                                <  2:618946/140‑1 (MQ=255)
                                                                cgATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGAc                                                                >  2:1360454/1‑140 (MQ=255)
                                                                cgATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGAc                                                                <  1:1492851/140‑1 (MQ=255)
                                                                             gCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTc                                                   >  1:1598337/1‑140 (MQ=255)
                                                                              cTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTcc                                                  >  2:866537/1‑140 (MQ=255)
                                                                               tGGCGAATTTCGATTATCTCTACCTGAGCGGGATTATCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCcg                                                 <  1:64089/140‑1 (MQ=255)
                                                                               tGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCcg                                                 <  1:1310388/140‑1 (MQ=255)
                                                                                ggCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCcgc                                                <  1:1713096/140‑1 (MQ=255)
                                                                                 gCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCcgcg                                               >  2:418451/1‑140 (MQ=255)
                                                                                 gCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCcgcg                                               >  2:1436273/1‑140 (MQ=255)
                                                                                     aTTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCtg                                           <  1:546530/140‑1 (MQ=255)
                                                                                     aTTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCtg                                           <  1:865040/140‑1 (MQ=255)
                                                                                          gATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGc                                      <  1:1784835/140‑1 (MQ=255)
                                                                                          gATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGc                                      <  1:1811651/140‑1 (MQ=255)
                                                                                               tctcTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCa                                 >  1:837711/1‑140 (MQ=255)
                                                                                                   tACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAaaga                             <  2:1521278/140‑1 (MQ=255)
                                                                                                     ccTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAaagaag                           >  2:185507/1‑140 (MQ=255)
                                                                                                     ccTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAaagaag                           <  1:255238/140‑1 (MQ=255)
                                                                                                      cTGAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAagaaga                          <  2:837711/140‑1 (MQ=255)
                                                                                                        gAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAgaga                        <  2:1598337/140‑1 (MQ=255)
                                                                                                        gAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAgaga                        <  1:185507/140‑1 (MQ=255)
                                                                                                        gAGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAgaga                        <  2:1268046/140‑1 (MQ=255)
                                                                                                         aGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAaag                              >  1:1785156/1‑133 (MQ=255)
                                                                                                         aGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAaag                              <  2:1785156/133‑1 (MQ=255)
                                                                                                         aGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAgagaa                       >  1:1008337/1‑139 (MQ=255)
                                                                                                         aGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAgaga                        <  1:214568/139‑1 (MQ=255)
                                                                                                         aGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAgaga                        >  2:214568/1‑139 (MQ=255)
                                                                                                         aGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGac                       >  1:1000411/1‑140 (MQ=255)
                                                                                                         aGCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGac                       >  2:390365/1‑140 (MQ=255)
                                                                                                          gCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAGGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGaca                      >  1:1147632/1‑140 (MQ=255)
                                                                                                          gCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGaca                      >  2:953944/1‑140 (MQ=255)
                                                                                                          gCGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGaca                      >  2:1173262/1‑140 (MQ=255)
                                                                                                           cGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGacac                     <  1:1559345/140‑1 (MQ=255)
                                                                                                           cGGGATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGacac                     <  2:903945/140‑1 (MQ=255)
                                                                                                            gggATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGAcaca                    <  2:1477532/140‑1 (MQ=255)
                                                                                                            gggATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGAcaca                    <  2:1021632/140‑1 (MQ=255)
                                                                                                            gggATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGAcaca                    <  1:38555/140‑1 (MQ=255)
                                                                                                            ggaaTTAGCTGGGCGTGCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGAcaca                    <  2:916008/137‑1 (MQ=255)
                                                                                                              gATTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGACAcagc                  <  1:478181/140‑1 (MQ=255)
                                                                                                               aTTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAagaaga                          >  1:1080804/1‑131 (MQ=255)
                                                                                                               aTTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAagaaga                          <  2:1080804/131‑1 (MQ=255)
                                                                                                               aTTAGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGACAcagca                 >  1:1246507/1‑140 (MQ=255)
                                                                                                                  aGCCTGGCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGACACAGCAGgt              <  1:1340040/140‑1 (MQ=255)
                                                                                                                        gCGATCTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGACACAGCAGGTGTACca        >  1:544364/1‑140 (MQ=255)
                                                                                                                             cTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGACACAGCAGGTGTACCAACaaa   >  2:1075242/1‑140 (MQ=255)
                                                                                                                             cTTAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGACACAGCAGGTATACCAACaaa   >  2:749517/1‑140 (MQ=255)
                                                                                                                              ttAAGCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGACACAGCAGGTGTACCAACAAAt  >  2:175180/1‑140 (MQ=255)
                                                                                                                                  gCCAGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGACAcagcag                <  1:1707239/122‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                    
ACGTTCTACTACTGGCGGAACGAAGCCGCCGCCAAATTCTGGCTGGAGAGTGAGCAGTCTGCGGCGATTTGCGAAGAGCTGGCGAATTTCGATTATCTCTACCTGAGCGGGATTAGCCTGGCGATCTTAAGCCCGACCAGCCGCGAAAAGCTGCTTTCCCTGCTGCGCGAATGCCGCGCCAACGGCGGAAAAGTGATTTTCGACAATAACTATCGTCCGCGCCTGTGGGCCAGCAAAGAAGAGACACAGCAGGTGTACCAACAAAT  >  NC_000913/3679713‑3679978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A