Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F73 I1 R1 23 85.6 2911730 99.3% 2891347 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,469,892 G→T M254I (ATG→ATT)  yfdI → CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,469,8920GT98.9% 321.6 / ‑2.9 89M254I (ATG→ATT) yfdICPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base T (54/34);  total (55/34)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

AATCTGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATGCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAATCTCATAAAGATGAAACGTTTTCGAATGCA  >  NC_000913/2469756‑2470027
                                                                                                                                        |                                                                                                                                       
aaTCTGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCa                                                                                                                                      <  1:357457/140‑1 (MQ=255)
aaTCTGTAATATGCGTGGTGTGCTTGCTTGAGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCa                                                                                                                                      >  2:1383468/1‑140 (MQ=255)
  tCTGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATc                                                                                                                                    <  2:267946/140‑1 (MQ=255)
    tGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGt                                                                                                                                  <  1:282895/140‑1 (MQ=255)
      tAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTAt                                                                                                                                >  1:193793/1‑140 (MQ=255)
       aaTATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATg                                                                                                                               >  2:964949/1‑140 (MQ=255)
       aaTATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATg                                                                                                                               <  2:775262/140‑1 (MQ=255)
         tatGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGtt                                                                                                                             <  1:964949/140‑1 (MQ=255)
           tGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTtga                                                                                                                           >  2:1454635/1‑140 (MQ=255)
             cGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTtgatg                                                                                                                         >  1:655111/1‑140 (MQ=255)
                     gcttgcttGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAgtgt                                                                                                                 <  1:1089538/140‑1 (MQ=255)
                      cttgcttgCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAgtgtg                                                                                                                <  1:1454635/140‑1 (MQ=255)
                      cttgcttgCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAgtgtg                                                                                                                >  2:1241960/1‑140 (MQ=255)
                      cttgcttgCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAgtgtg                                                                                                                >  2:690132/1‑140 (MQ=255)
                      cttgcttgCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAgtgtg                                                                                                                <  1:442844/140‑1 (MQ=255)
                       ttgcttgcGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAgtgtgt                                                                                                               <  2:212173/140‑1 (MQ=255)
                       ttgcttgaGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAgtgtgt                                                                                                               <  1:1383468/140‑1 (MQ=255)
                        tgcttgcGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATT‑AATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTg                                                                                                             >  2:490128/1‑140 (MQ=255)
                         gcttgcGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATg                                                                                                                               <  1:537257/122‑1 (MQ=255)
                         gcttgcGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATg                                                                                                                               >  2:537257/1‑122 (MQ=255)
                         gcttgcGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTg                                                                                                             >  1:697561/1‑140 (MQ=255)
                         gcttgcGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTg                                                                                                             <  1:466780/140‑1 (MQ=255)
                              cGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATGCCATCGTATGTTGATGATAAGTGTGTTGGGTTa                                                                                                        >  1:888573/1‑140 (MQ=255)
                               gTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAg                                                                                                       <  2:31507/140‑1 (MQ=255)
                               gTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAg                                                                                                       <  2:193793/140‑1 (MQ=255)
                                    tatTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGtt                                                                                                              >  1:898899/1‑128 (MQ=255)
                                    tatTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGtt                                                                                                              <  2:898899/128‑1 (MQ=255)
                                    tatTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGcc                                                                                                  <  1:329441/140‑1 (MQ=255)
                                           aaTATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGta                                                                                           <  1:620174/140‑1 (MQ=255)
                                               tCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAg                                                                                                       >  1:558462/1‑124 (MQ=255)
                                               tCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAg                                                                                                       <  2:558462/124‑1 (MQ=255)
                                               tCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGtaataa                                                                                       >  2:1335537/1‑140 (MQ=255)
                                                  tATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAAtt                                                                                    >  2:1232541/1‑140 (MQ=255)
                                                  tATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAAtt                                                                                    >  1:817716/1‑140 (MQ=255)
                                                  tATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAAtt                                                                                    <  1:932637/140‑1 (MQ=255)
                                                   aTTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGcc                                                                                                  <  2:1362879/125‑1 (MQ=255)
                                                   aTTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGcc                                                                                                  >  1:1362879/1‑125 (MQ=255)
                                                    ttCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCg                                                                                  >  2:301527/1‑140 (MQ=255)
                                                      cAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGAc                                                                                <  2:817716/140‑1 (MQ=255)
                                                       aaaaGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACa                                                                               <  2:1264110/140‑1 (MQ=255)
                                                         aaGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACata                                                                             >  2:1099435/1‑140 (MQ=255)
                                                         aaGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACata                                                                             >  1:426640/1‑140 (MQ=255)
                                                         aaGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACata                                                                             >  2:552970/1‑140 (MQ=255)
                                                             tgttgtTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCAt                                                                         >  2:974821/1‑140 (MQ=255)
                                                               ttgttgAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCAttt                                                                       >  2:112433/1‑140 (MQ=255)
                                                               ttgctgAATTCAATCAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCAATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTAGACATATCAttt                                                                       >  2:1142671/1‑140 (MQ=255)
                                                                    gAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGgcgc                                                                  <  1:764802/140‑1 (MQ=255)
                                                                     aaTTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCa                                                                 <  2:626326/140‑1 (MQ=255)
                                                                      aTTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCaa                                                                >  2:948562/1‑140 (MQ=255)
                                                                       ttAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAAc                                                               >  2:457289/1‑140 (MQ=255)
                                                                       ttAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAAc                                                               <  1:1241960/140‑1 (MQ=255)
                                                                          aaTAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAAcccc                                                            >  2:963553/1‑140 (MQ=255)
                                                                               gTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAg                                                       >  1:403418/1‑140 (MQ=255)
                                                                               gTACCATGCAACATACTTCGGTAGATATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAg                                                       >  1:585599/1‑140 (MQ=255)
                                                                                 aCCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGaa                                                     >  2:1259505/1‑140 (MQ=255)
                                                                                    aTGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGtt                                                  <  1:552970/140‑1 (MQ=255)
                                                                                    aTGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGtt                                                  >  2:464184/1‑140 (MQ=255)
                                                                                     tGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTg                                                 >  2:31726/1‑140 (MQ=255)
                                                                                     tGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTg                                                 >  1:1247327/1‑140 (MQ=255)
                                                                                     tGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTg                                                 >  1:1432280/1‑140 (MQ=255)
                                                                                     tGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTg                                                 >  2:475182/1‑140 (MQ=255)
                                                                                     tGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTg                                                 >  2:911708/1‑140 (MQ=255)
                                                                                     tGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTg                                                 >  2:404543/1‑140 (MQ=255)
                                                                                     tGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTg                                                 >  1:217915/1‑140 (MQ=255)
                                                                                         aCATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAAc                                             >  2:1430811/1‑140 (MQ=255)
                                                                                          cATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACg                                            <  2:1432280/140‑1 (MQ=255)
                                                                                          cATACTTCGGAAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTAGACATATCATTTGGCGCAACCCCAGCAGAAGTTGGAACg                                            >  2:569788/1‑140 (MQ=255)
                                                                                              cTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAAt                                        <  1:464184/140‑1 (MQ=255)
                                                                                               ttCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATg                                       >  2:241221/1‑140 (MQ=255)
                                                                                               ttCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATg                                       >  2:817404/1‑140 (MQ=255)
                                                                                               ttCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATg                                       >  1:1274501/1‑140 (MQ=255)
                                                                                                 cGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGtt                                     >  1:864615/1‑140 (MQ=255)
                                                                                                  ggTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGttt                                    >  1:149272/1‑140 (MQ=255)
                                                                                                  ggTAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGttt                                    <  1:241221/140‑1 (MQ=255)
                                                                                                    tAGTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCg                                  >  2:1451561/1‑140 (MQ=255)
                                                                                                      gTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGaa                                <  1:974821/140‑1 (MQ=255)
                                                                                                      gTTATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGaa                                >  2:63112/1‑140 (MQ=255)
                                                                                                       ttATCTTTATATGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAAt                               >  1:1379159/1‑140 (MQ=255)
                                                                                                              tataTGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAATCTCATaa                        >  1:1163567/1‑140 (MQ=255)
                                                                                                              tataTGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAATCTCATaa                        >  2:1075068/1‑140 (MQ=255)
                                                                                                                tatGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAGTTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAATCTCATAAAg                      >  2:59623/1‑140 (MQ=255)
                                                                                                                tatGAAAAACAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAATCTCATAAAg                      >  1:1279403/1‑140 (MQ=255)
                                                                                                                     aaaaCAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAATCTCATAAAGATGaa                 >  2:546983/1‑140 (MQ=255)
                                                                                                                     aaaaCAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAATCTCATAAAGATGaa                 >  1:1194229/1‑140 (MQ=255)
                                                                                                                      aaaCAACGGGTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAATCTCATAAAGATGaaa                >  2:308399/1‑140 (MQ=255)
                                                                                                                               gTATAAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAATCTCATAAAGATGAAACGTTTTCGa       <  1:31726/140‑1 (MQ=255)
                                                                                                                                  taAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAATCTCATAAAGATGAAACGTTTTCGAATg    >  2:69807/1‑140 (MQ=255)
                                                                                                                                  taAAATTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAATCTCATAAAGATGAAACGTTTTCGAATg    <  1:1430811/140‑1 (MQ=255)
                                                                                                                                    aaaTTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAATCTCATAAAGATGAAACGTTTTCGAATGCa  <  1:1451561/140‑1 (MQ=255)
                                                                                                                                    aaaTTCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAATCTCATAAAGATGAAACGTTTTCGAATGCa  <  1:546983/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
AATCTGTAATATGCGTGGTGTGCTTGCTTGCGTCAATATTTGCAATATCTTATTCAAAAGGTGTTGTTGAATTAAATAAGTACCATGCAACATACTTCGGTAGTTATCTTTATATGAAAAACAACGGGTATAAAATGCCATCGTATGTTGATGATAAGTGTGTTGGGTTAGATGCCTGGGGTAATAAATTCGACATATCATTTGGCGCAACCCCAACAGAAGTTGGAACGGAATGTTTCGAATCTCATAAAGATGAAACGTTTTCGAATGCA  >  NC_000913/2469756‑2470027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A