Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F73 I1 R1	29	53.4	1802238	99.2%	1787820	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,470,789	G→T	intergenic (+327/+288)	yfdI → / ← yfdK	CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase/CPS‑53 (KpLE1) prophage; putative tail fiber assembly protein YfdK

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,470,789	0	G	T	100.0%	334.6 / NA	93	intergenic (+327/+288)	yfdI/yfdK	CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase/CPS‑53 (KpLE1) prophage; putative tail fiber assembly protein YfdK
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (58/35); total (58/35)

CCTCCAGAACCAAGTGCTGATATTATCATCAACAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCAGGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCAGTAGATGCAGCAGAAGCACAGCGCCAGTCG  >  NC_000913/2470653‑2470925

ccTCCAGAACCAAGTGCTGATATTATCATCAACAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCAtggg                                                                                                                                       <  1:11269/140‑1 (MQ=255)

 cTCCAGAACCAAGTGCTGATATTATCATCAACAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGt                                                                                                                                      >  1:469342/1‑140 (MQ=255)

 cTCCAGAACCAAGTGCTGATATTATCATCAACAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGt                                                                                                                                      >  1:68562/1‑140 (MQ=255)

 cTCCAGAACCAAGTGCTGATATTATCATCAACAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGt                                                                                                                                      >  2:872584/1‑140 (MQ=255)

 cTCCAGAACCAAGTGCTGATATTATCATCAACAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGt                                                                                                                                      >  2:223291/1‑140 (MQ=255)

          cAAGTGCTGATATTATCATCAACAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGt                                                                                                                             >  2:241027/1‑140 (MQ=255)

            aGTGCTGATATTATCATCAACAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTa                                                                                                                                    <  1:777069/131‑1 (MQ=255)

            aGTGCTGATATTATCATCAACAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTa                                                                                                                                    >  2:777069/1‑131 (MQ=255)

            aGTGCTGATATTATCATCAACAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTAt                                                                                                                           >  1:428641/1‑140 (MQ=255)

            aGTGCTGATATTATCATCAACAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTAt                                                                                                                           >  1:346313/1‑140 (MQ=255)

                cTGATATTATCATCAACAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGt                                                                                                                       >  2:867641/1‑140 (MQ=255)

                   atatTATCATCAACAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTccc                                                                                                                    >  2:259188/1‑140 (MQ=255)

                            tcaACAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATc                                                                                                           <  2:184321/140‑1 (MQ=255)

                              aaCAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGc                                                                                                         <  1:223291/140‑1 (MQ=255)

                              aaCAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGc                                                                                                         <  2:739101/140‑1 (MQ=255)

                              aaCAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGc                                                                                                         <  1:577063/140‑1 (MQ=255)

                              aaCAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGc                                                                                                         <  2:172863/140‑1 (MQ=255)

                                   tGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCAt                                                                                                    >  2:313015/1‑140 (MQ=255)

                                   tGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGAGTCCCGCGACTATCGCCCCAt                                                                                                    >  2:334915/1‑140 (MQ=255)

                                      tagataCATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTaa                                                                                                 <  1:552014/140‑1 (MQ=255)

                                           aCATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCa                                                                                            >  2:17164/1‑140 (MQ=255)

                                             atatACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATa                                                                                          >  2:497484/1‑140 (MQ=255)

                                             atatACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATa                                                                                          >  2:125152/1‑140 (MQ=255)

                                             atatACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCAATTAACGCCATa                                                                                          >  1:178622/1‑140 (MQ=255)

                                               ataCTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACg                                                                                        >  2:711690/1‑140 (MQ=255)

                                                  cTAACTGATTATCGTTATAAGTGGTTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATa                                                                                     >  2:20264/1‑140 (MQ=255)

                                                  cTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATa                                                                                     >  1:244503/1‑140 (MQ=255)

                                                    aaCTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATaaa                                                                                   >  1:10465/1‑140 (MQ=255)

                                                     aCTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAAt                                                                                  >  2:557076/1‑140 (MQ=255)

                                                     aCTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAAt                                                                                  >  1:726641/1‑140 (MQ=255)

                                                     aCTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAAt                                                                                  >  1:582238/1‑140 (MQ=255)

                                                       tGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATgg                                                                                >  2:379705/1‑140 (MQ=255)

                                                        gATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATggg                                                                               >  2:623431/1‑140 (MQ=255)

                                                        gATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATggg                                                                               <  1:601432/140‑1 (MQ=255)

                                                        gATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATggg                                                                               <  2:346313/140‑1 (MQ=255)

                                                        gATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATggg                                                                               <  2:594608/140‑1 (MQ=255)

                                                        gATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATggg                                                                               <  1:497484/140‑1 (MQ=255)

                                                          ttATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATggg                                                                               <  1:112573/138‑1 (MQ=255)

                                                          ttATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATggg                                                                               >  2:112573/1‑138 (MQ=255)

                                                           tATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATg                                                                            >  1:507826/1‑140 (MQ=255)

                                                            aTCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATgg                                                                           <  1:284918/140‑1 (MQ=255)

                                                                 tataAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTgaga                                                                      >  1:404655/1‑140 (MQ=255)

                                                                       tGATTACTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTATGCATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGGGAGAGATggg                                                                >  2:201235/1‑140 (MQ=39)

                                                                         aTTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTg                                                              >  1:369188/1‑140 (MQ=255)

                                                                          ttCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGa                                                             >  1:155119/1‑140 (MQ=255)

                                                                           tCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCTTTATCTCCATACGATAAATGGGATGGTGAGAAATGGGTGAc                                                            <  2:345514/140‑1 (MQ=37)

                                                                           tCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGAc                                                            <  2:373189/140‑1 (MQ=255)

                                                                           tCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGAc                                                            >  1:566885/1‑140 (MQ=255)

                                                                            ccTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACg                                                           <  2:885329/140‑1 (MQ=255)

                                                                               gTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGAt                                                        >  1:543015/1‑140 (MQ=255)

                                                                                tCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATa                                                       >  1:202720/1‑140 (MQ=255)

                                                                                   tataCTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCg                                                    <  2:897445/140‑1 (MQ=255)

                                                                                     taCTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAg                                                  >  2:538141/1‑140 (MQ=255)

                                                                                     taCTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAg                                                  <  2:469342/140‑1 (MQ=255)

                                                                                      aCTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAgg                                                 <  1:241027/140‑1 (MQ=255)

                                                                                       cTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGc                                                <  1:623431/140‑1 (MQ=255)

                                                                                        ttAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGca                                               >  1:187930/1‑140 (MQ=255)

                                                                                        ttAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGca                                               <  1:600736/140‑1 (MQ=255)

                                                                                          aaCATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCg                                                    >  1:856646/1‑133 (MQ=255)

                                                                                          aaCATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCg                                                    <  2:856646/133‑1 (MQ=255)

                                                                                          aaCATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGcaca                                             >  2:465216/1‑140 (MQ=255)

                                                                                          aaCATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGcaca                                             >  1:237074/1‑140 (MQ=255)

                                                                                          aaCATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGcaca                                             >  1:428340/1‑140 (MQ=255)

                                                                                          aaCATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGcaca                                             >  2:30607/1‑140 (MQ=255)

                                                                                          aaCATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGcaca                                             >  2:28513/1‑140 (MQ=255)

                                                                                          aaCATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGcaca                                             >  2:298732/1‑140 (MQ=255)

                                                                                          aaCATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGcaca                                             >  1:632175/1‑140 (MQ=255)

                                                                                          aaCATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGcaca                                             >  1:846072/1‑140 (MQ=255)

                                                                                            cATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGca                                               >  2:66209/1‑136 (MQ=255)

                                                                                            cATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGca                                               <  1:66209/136‑1 (MQ=255)

                                                                                               aaGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATa                                        >  2:45636/1‑140 (MQ=255)

                                                                                               aaGGACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATa                                        >  2:166040/1‑140 (MQ=255)

                                                                                                 ggACTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGc                                      >  1:583110/1‑140 (MQ=255)

                                                                                                   aCTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGt                                    <  2:726641/140‑1 (MQ=255)

                                                                                                    cTTCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTc                                   <  1:379705/140‑1 (MQ=255)

                                                                                                      tCCACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGc                                 >  1:411401/1‑140 (MQ=255)

                                                                                                       ccACTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCa                                >  2:190343/1‑140 (MQ=255)

                                                                                                         aCTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCAGt                              >  2:284211/1‑140 (MQ=255)

                                                                                                         aCTTTGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCAGt                              <  2:785163/140‑1 (MQ=255)

                                                                                                            ttGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCAGTAGa                           >  2:227086/1‑140 (MQ=255)

                                                                                                             tGATTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCAGTAGAt                          >  1:285567/1‑140 (MQ=255)

                                                                                                               aTTCTCGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCAGTAGATgc                        <  2:428340/140‑1 (MQ=255)

                                                                                                                    cGATAGACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCAGTAGATGcagcag                   <  1:557076/140‑1 (MQ=255)

                                                                                                                         gACACATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCAGTAGATGCAGCAGAAGca              >  1:262646/1‑140 (MQ=255)

                                                                                                                          acacATAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCAGTAGATGCAGCAGAAGcac             >  1:571851/1‑140 (MQ=255)

                                                                                                                               tAACATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCAGTAGATGCAGCAGAAGCACAgcgc        >  1:132968/1‑140 (MQ=255)

                                                                                                                                 aCATCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCAGTAGATGCAGCAGAAGCACAGCGCCa      >  2:54880/1‑140 (MQ=255)

                                                                                                                                   aTCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCAGTAGATGCAGCAGAAGCACAGCGCCAGt    <  1:17164/140‑1 (MQ=255)

                                                                                                                                   aTCCATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCAGTAGATGCAGCAGAAGCACAGCGCCAGt    <  1:149843/140‑1 (MQ=255)

                                                                                                                                     ccATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCAGTAGATGCAGCAGAAGCACAGCGCCAGTCg  <  2:68562/140‑1 (MQ=255)

                                                                                                                                     ccATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCAGTAGATGCAGCAGAAGCACAGCGCCAGTCg  <  1:703994/140‑1 (MQ=255)

                                                                                                                                     ccATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCAGTAGATGCAGCAGAAGCACAGCGCCAGTCg  <  1:461834/140‑1 (MQ=255)

                                                                                                                                     ccATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCAGTAGATGCAGCAGAAGCACAGCGCCAGTCg  <  1:166040/140‑1 (MQ=255)

                                                                                                                                     ccATGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAACATAGCGTCGCAGTAGATGCAGCAGAAGCACAGCGCCAGTCg  <  2:632175/140‑1 (MQ=255)

CCTCCAGAACCAAGTGCTGATATTATCATCAACAGTGATAGATACATATACTAACTGATTATCGTTATAAGTGATTCCTGTCTTATACTTAACATAAGGACTTCCACTTTGATTCTCGATAGACACATAACATCCAGGGGTTATGTTTGTATGCGTCCCGCGACTATCGCCCCATTAACGCCATACGATAAATGGGATGGTGAGAAATGGGTGACGGATACCGAGGCACAGCATAGCGTCGCAGTAGATGCAGCAGAAGCACAGCGCCAGTCG  >  NC_000913/2470653‑2470925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A