Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F73 I1 R1 23 85.6 2911730 99.3% 2891347 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,601,453 C→A A212S (GCC→TCC)  ftsX ← cell division protein FtsX

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,601,4530CA98.7% 280.2 / ‑3.7 79A212S (GCC→TCC) ftsXcell division protein FtsX
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base A (44/34);  total (44/35)
Fisher's exact test for biased strand distribution p-value = 4.43e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01

TACGTTAATGGAGTCACGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGCAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCTGGAAATCGAGTTTCGGGATCACCACCGCCACTGC  >  NC_000913/3601316‑3601573
                                                                                                                                         |                                                                                                                        
tACGTTAATGGAGTCACGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGaaa                                                                                                                        >  2:324273/1‑140 (MQ=255)
tACGTTAATGGAGTCACGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGaaa                                                                                                                        >  1:1416725/1‑140 (MQ=255)
   gTTAATGGAGTCACGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAAcc                                                                                                                     >  1:749746/1‑140 (MQ=255)
    ttAATGGAGTCACGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCa                                                                                                                    >  1:942136/1‑140 (MQ=255)
    ttAATGGAGTCACGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCa                                                                                                                    >  2:418079/1‑140 (MQ=255)
      aaTGGAGTCACGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGc                                                                                                                  <  1:848138/140‑1 (MQ=255)
       aTGGAGTCACGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCt                                                                                                                 <  1:324273/140‑1 (MQ=255)
         ggAGTCACGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGt                                                                                                               <  1:418079/140‑1 (MQ=255)
          gAGTCACGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTc                                                                                                              >  2:1250516/1‑140 (MQ=255)
           aGTCACGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTca                                                                                                             <  2:1416725/140‑1 (MQ=255)
             tCACGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTcatc                                                                                                           >  2:252052/1‑140 (MQ=255)
             tCACGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTcatc                                                                                                           >  1:613699/1‑140 (MQ=255)
             tCACGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTcatc                                                                                                           >  1:368151/1‑140 (MQ=255)
             tCACGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTcatc                                                                                                           >  2:308265/1‑140 (MQ=255)
             tCACGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTcatc                                                                                                           >  1:1057261/1‑140 (MQ=255)
              cACGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTcatcc                                                                                                          >  1:358367/1‑140 (MQ=255)
               aCGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTcatcca                                                                                                         >  1:1094527/1‑140 (MQ=255)
                 ggCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTcatccatc                                                                                                       >  2:740642/1‑140 (MQ=255)
                    gAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGc                                                                                                    >  1:1243175/1‑140 (MQ=255)
                     aGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCa                                                                                                   >  2:642685/1‑140 (MQ=255)
                              aCTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCaa                                                                                          <  1:794772/140‑1 (MQ=255)
                              aCTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCaa                                                                                          <  1:95708/140‑1 (MQ=255)
                              aCTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCaa                                                                                          <  1:1337970/140‑1 (MQ=255)
                              aCTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCaa                                                                                          <  2:550880/140‑1 (MQ=255)
                               cTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAAt                                                                                         >  2:1151326/1‑140 (MQ=255)
                                tCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATg                                                                                        <  1:819122/140‑1 (MQ=255)
                                  aGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGcc                                                                                      <  2:749746/140‑1 (MQ=255)
                                  aGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGcc                                                                                      <  2:522309/140‑1 (MQ=255)
                                    aCGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGt                                                                                    >  2:1165435/1‑140 (MQ=255)
                                       cacaCTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTaa                                                                                 >  1:494239/1‑140 (MQ=255)
                                             gTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCg                                                                           <  1:751242/140‑1 (MQ=255)
                                                aCCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGa                                                                        <  2:1243175/140‑1 (MQ=255)
                                                aCCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGa                                                                        <  2:242548/140‑1 (MQ=255)
                                                     tGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGa                                                                   >  1:354378/1‑140 (MQ=255)
                                                      gACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGAt                                                                  >  1:1035709/1‑140 (MQ=255)
                                                      gACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGAt                                                                  >  2:649139/1‑140 (MQ=255)
                                                      gACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGAt                                                                  >  1:348093/1‑140 (MQ=255)
                                                      gACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCCCCCGACCAGCCCGGTCAACGCCGCCAGACGGGCAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGAt                                                                  >  2:103179/1‑140 (MQ=255)
                                                        cGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCa                                                                >  1:870998/1‑140 (MQ=255)
                                                        cGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCa                                                                >  1:413551/1‑140 (MQ=255)
                                                        cGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCa                                                                >  2:1410247/1‑140 (MQ=255)
                                                        cGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCa                                                                >  1:502076/1‑140 (MQ=255)
                                                         gAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCAc                                                               <  1:740642/140‑1 (MQ=255)
                                                          aGGAACACGGCCGCCACCATCAACACGCCGATCATCGGCGAAACGCGCCCGACCAGCCCGGTCAACGACGCCAGACGGGCAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACg                                                              <  1:103179/140‑1 (MQ=255)
                                                           ggAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGc                                                             <  1:1344654/140‑1 (MQ=255)
                                                           ggAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGc                                                             <  2:167999/140‑1 (MQ=255)
                                                           ggAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGc                                                             <  1:308265/140‑1 (MQ=255)
                                                            gAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCa                                                            <  2:942136/140‑1 (MQ=255)
                                                            gAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCa                                                            <  2:502076/140‑1 (MQ=255)
                                                             aaCACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAg                                                           <  1:1151326/140‑1 (MQ=255)
                                                                    ccgccACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTc                                                    >  1:571829/1‑140 (MQ=255)
                                                                     cgccACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCa                                                   <  1:1410247/140‑1 (MQ=255)
                                                                      gccACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAg                                                  <  1:914803/140‑1 (MQ=255)
                                                                       ccaccaTCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCa                                                            <  2:291868/129‑1 (MQ=255)
                                                                       ccaccaTCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCa                                                            >  1:291868/1‑129 (MQ=255)
                                                                       ccaccaTCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGt                                                 >  1:728902/1‑140 (MQ=255)
                                                                       ccaccaTCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGt                                                 >  1:71729/1‑140 (MQ=255)
                                                                        caccaTCAACGCGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTg                                                <  1:545019/140‑1 (MQ=255)
                                                                            aTCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTc                                            >  1:676569/1‑140 (MQ=255)
                                                                               aaCACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGt                                         >  1:1004472/1‑140 (MQ=255)
                                                                                acacGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTc                                        <  1:252052/140‑1 (MQ=255)
                                                                                    gCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCt                                    <  2:185891/140‑1 (MQ=255)
                                                                                    gCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCt                                    >  1:1051054/1‑140 (MQ=255)
                                                                                    gCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCt                                    >  2:384519/1‑140 (MQ=255)
                                                                                    gCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCt                                    >  2:400175/1‑140 (MQ=255)
                                                                                     ccGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCTg                                   >  1:680944/1‑140 (MQ=255)
                                                                                     ccGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCTg                                   >  1:1448245/1‑140 (MQ=255)
                                                                                     ccGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCTg                                   >  1:1095258/1‑140 (MQ=255)
                                                                                      cGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCTgg                                  >  1:703824/1‑140 (MQ=255)
                                                                                           atcGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCTGGAAATc                             <  2:1095258/140‑1 (MQ=255)
                                                                                           atcGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCTGGAAATc                             <  1:274104/140‑1 (MQ=255)
                                                                                                  aaaCGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCTGGAAATCGAGTTTc                      <  1:1165435/140‑1 (MQ=255)
                                                                                                   aaCGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCTGGAAATCGAGTTTCg                     >  2:388507/1‑140 (MQ=255)
                                                                                                      gcgcCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCTGGAAATCGAGTTTCGGGa                  <  2:413551/140‑1 (MQ=255)
                                                                                                      gcgcCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCTGGAAATCGAGTTTCGGGa                  <  2:571829/140‑1 (MQ=255)
                                                                                                      gcgcCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCATCCCCTGGAAATCGAGTTTCGGGa                  <  2:613699/140‑1 (MQ=255)
                                                                                                       cgcccgccCAGCCCGGTCAACGCCGCAAGACGGGAAAACCCGCTGTCATCCCTCCCCCCTTGGTCATTGCGTTTAACCTGGGTTATACGATCACGCGGCTTATTCAGTGATTCCGTCCCTTGGAAAGCGAGTTTCGGGAt                 <  2:1035709/140‑1 (MQ=255)
                                                                                                       cgcCCGACTAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCTGGAAATCGAGTTTCGGGAt                 >  2:1105284/1‑140 (MQ=255)
                                                                                                       cgcCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCTGGAAATCGAGTTTCGGGAt                 >  2:417748/1‑140 (MQ=255)
                                                                                                       cgcCCGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCTGGAAATCGAGTTTCGGGAt                 >  2:55752/1‑140 (MQ=255)
                                                                                                         cccGACCAGCCCGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCTGGAAATCGAGTTTCGGGATca               >  1:99518/1‑140 (MQ=255)
                                                                                                                  cccGGTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGACAATGCCGTTAATCTGCGTGATACGATCACCCAGCGTATTCAGTGATTCCGTCCCCTGGAAATCGAGTTTCGGGAGCACCACCGCCa      >  2:397803/1‑140 (MQ=255)
                                                                                                                      gTCACCGCCGCCAGAGGGAAAACCCAGCTGTCATCCACCCGCCCTTCGTCAATGCCGTTAATCGGCGTGATACGATCACGCAGCGTATTCAGTGATCCCGCCCCCTGGAAATCGAGTTTGGGGATCCCCACCGCCACTGc  <  2:536013/140‑1 (MQ=255)
                                                                                                                      gTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCTGGAAATCGAGTTTCGGGATc                >  2:422678/1‑126 (MQ=255)
                                                                                                                      gTCAACGCCGCCAGACGGGAAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCTGGAAATCGAGTTTCGGGATc                <  1:422678/126‑1 (MQ=255)
                                                                                                                                         |                                                                                                                        
TACGTTAATGGAGTCACGGCGAGCAAAGATACTCAGACGCACACTGTTACCGATGACGAGGAACACGGCCGCCACCATCAACACGCCGATCATCGCCGAAACGCGCCCGACCAGCCCGGTCAACGCCGCCAGACGGGCAAACCAGCTGTCATCCATCCGCACTTCGTCAATGCCGTTAATCTGCGTGATACGATCACGCAGCGTATTCAGTGATTCCGTCCCCTGGAAATCGAGTTTCGGGATCACCACCGCCACTGC  >  NC_000913/3601316‑3601573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A