Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F73 I1 R1 23 85.6 2911730 99.3% 2891347 139.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,338,429 G→T P698Q (CCG→CAG)  adiA ← arginine decarboxylase, degradative

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,338,4290GT100.0% 278.9 / NA 79P698Q (CCG→CAG) adiAarginine decarboxylase, degradative
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (37/42);  total (37/42)

ATTTCAGTCCCTTCAGTTTCGTGTTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCGGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAGGCCGGAATAGGCTT  >  NC_000913/4338294‑4338564
                                                                                                                                       |                                                                                                                                       
atTTCAGTCCCTTCAGTTTCGTGTTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATa                                                                                                                                     <  2:1424207/140‑1 (MQ=255)
atTTCAGTCCCTTCAGTTTCGTGTTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATa                                                                                                                                     <  2:118077/140‑1 (MQ=255)
atTTCAGTCCCTTCAGTTTCGTGTTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATa                                                                                                                                     <  1:962112/140‑1 (MQ=255)
   tCAGTCCCTTCAGTTTCGTGTTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACgg                                                                                                                                  <  2:1331174/140‑1 (MQ=255)
   tCAGTCCCTTCAGTTTCGTGTTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACgg                                                                                                                                  <  2:1198607/140‑1 (MQ=255)
     aGTCCCTTCAGTTTCGTGTTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGa                                                                                                                                <  2:954676/140‑1 (MQ=255)
     aGTCCCTTCAGTTTCGTGTTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGa                                                                                                                                <  2:1260824/140‑1 (MQ=255)
     aGTCCCTTCAGTTTCGTGTTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGa                                                                                                                                <  1:913558/140‑1 (MQ=255)
       tCCCTTCAGTTTCGTGTTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATa                                                                                                                              <  2:242354/140‑1 (MQ=255)
           ttCAGTTTCGTGTTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTg                                                                                                                          >  1:1041398/1‑140 (MQ=255)
                tttCGTGTTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGttt                                                                                                                     >  1:126829/1‑140 (MQ=255)
                     tgtTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCcgc                                                                                                                >  1:999789/1‑140 (MQ=255)
                     tgtTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCcgc                                                                                                                >  1:203669/1‑140 (MQ=255)
                         cAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATg                                                                                                            <  2:462561/140‑1 (MQ=255)
                         cAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGACTGATACGGGATAACTGAGTTTGCCGCGATg                                                                                                            <  2:862/140‑1 (MQ=255)
                            aTCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGt                                                                                                         >  1:1340786/1‑140 (MQ=255)
                             tCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTc                                                                                                        <  1:1216429/140‑1 (MQ=255)
                                aGGGAAATGGT‑GTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTgg                                                                                                    <  1:435203/140‑1 (MQ=255)
                                  ggAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGc                                                                                                   <  2:999789/140‑1 (MQ=255)
                                      aTGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGAt                                                                                               >  1:1155703/1‑140 (MQ=255)
                                       tggtggTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGAtt                                                                                              >  1:476797/1‑140 (MQ=255)
                                       tggtggTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGAtt                                                                                              >  1:882205/1‑140 (MQ=255)
                                         gtggtCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGAtttt                                                                                            <  2:605883/140‑1 (MQ=255)
                                         gtggtCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGAtttt                                                                                            <  2:476797/140‑1 (MQ=255)
                                           ggtCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCa                                                                                          <  2:526593/140‑1 (MQ=255)
                                           ggtCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCa                                                                                          <  1:132596/140‑1 (MQ=255)
                                            gtCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGc                                                                                                   >  2:912524/1‑130 (MQ=255)
                                            gtCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGc                                                                                                   <  1:912524/130‑1 (MQ=255)
                                              cccAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATg                                                                                       >  2:1292355/1‑140 (MQ=255)
                                              cccAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATg                                                                                       >  1:946707/1‑140 (MQ=255)
                                                 aGGATTGCAGCGCGCGTAAATAACTTGCTTGCGGGCTGTTTTTATCGCCGAAGTTTTCACCAGACTGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGAt                                                                                    <  2:203669/140‑1 (MQ=255)
                                                 aGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGAt                                                                                    <  2:812307/140‑1 (MQ=255)
                                                 aGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGAt                                                                                    >  1:447047/1‑140 (MQ=255)
                                                   gATTGCAGCGAGCTTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATAc                                                                                  <  2:275816/140‑1 (MQ=255)
                                                   gATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATAc                                                                                  <  1:321901/140‑1 (MQ=255)
                                                   gATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATAc                                                                                  <  2:882205/140‑1 (MQ=255)
                                                        cAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGtt                                                                             >  2:36626/1‑140 (MQ=255)
                                                        cAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGtt                                                                             >  2:1274358/1‑140 (MQ=255)
                                                        cAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAACAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGtt                                                                             >  1:599200/1‑140 (MQ=255)
                                                             agcgTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACa                                                                        <  1:290851/140‑1 (MQ=255)
                                                             agcgTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACa                                                                        <  1:1011330/140‑1 (MQ=255)
                                                              gcgTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACAt                                                                       >  1:210528/1‑140 (MQ=255)
                                                                  aaaTAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACAttgtt                                                                   <  2:973824/140‑1 (MQ=255)
                                                                       acttacttGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGa                                                              <  1:980028/140‑1 (MQ=255)
                                                                          tacttGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACaa                                                           >  1:911102/1‑140 (MQ=255)
                                                                          tacttGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACaa                                                           >  2:104690/1‑140 (MQ=255)
                                                                            cttGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATc                                                         <  1:1292355/140‑1 (MQ=255)
                                                                            cttGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATc                                                         >  2:428618/1‑140 (MQ=255)
                                                                                cGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGt                                                     >  1:363157/1‑140 (MQ=255)
                                                                                cGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGt                                                     >  2:385434/1‑140 (MQ=255)
                                                                                       tttttATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGc                                              >  2:1086821/1‑140 (MQ=255)
                                                                                         tttATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCtt                                            >  1:276378/1‑140 (MQ=255)
                                                                                            aTCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCAc                                         >  2:193961/1‑140 (MQ=255)
                                                                                               gCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCAcgcg                                      >  2:137696/1‑140 (MQ=255)
                                                                                                 cGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCggg                                    >  1:348863/1‑140 (MQ=255)
                                                                                                 cGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCggg                                    >  1:350833/1‑140 (MQ=255)
                                                                                                 cGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCggg                                    >  2:45324/1‑140 (MQ=255)
                                                                                                 cGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCggg                                    <  1:910304/140‑1 (MQ=255)
                                                                                                   aaGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGt                                  <  2:738143/140‑1 (MQ=255)
                                                                                                         tCACCAGACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTc                            <  1:385434/140‑1 (MQ=255)
                                                                                                               gACAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCAc                      <  1:1388204/140‑1 (MQ=255)
                                                                                                                aCAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCAcc                     >  2:375971/1‑140 (MQ=255)
                                                                                                                aCAGCAGCATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCAcc                     >  1:674397/1‑140 (MQ=255)
                                                                                                                  agcagcATCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCgg                   <  1:428618/140‑1 (MQ=255)
                                                                                                                    cagcaTCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCa                 >  1:484011/1‑140 (MQ=255)
                                                                                                                     agcaTCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAg                >  1:1068237/1‑140 (MQ=255)
                                                                                                                      gcaTCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTTACGCGGGGTGACTTCCGCCACCGGCAgg               <  2:1340786/140‑1 (MQ=255)
                                                                                                                      gcaTCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAgg               <  2:946707/140‑1 (MQ=255)
                                                                                                                      gcaTCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAgg               <  2:484011/140‑1 (MQ=255)
                                                                                                                      gcaTCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAgg               <  2:276378/140‑1 (MQ=255)
                                                                                                                       caTCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAGGc              >  1:820543/1‑140 (MQ=255)
                                                                                                                       caTCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAGGc              <  1:336376/140‑1 (MQ=255)
                                                                                                                        aTCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAGGcc             <  1:1086821/140‑1 (MQ=255)
                                                                                                                         tCGGGATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAGGCCg            >  2:420356/1‑140 (MQ=255)
                                                                                                                            ggATTCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAGGCCGGaa         >  1:445498/1‑140 (MQ=255)
                                                                                                                               ttCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAGGCCGGAATAg      >  2:806884/1‑140 (MQ=255)
                                                                                                                                tCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAGGCCGGAATAgg     <  2:674397/140‑1 (MQ=255)
                                                                                                                                tCCTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAGGCCGGAATAgg     <  2:1041398/140‑1 (MQ=255)
                                                                                                                                 ccTGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAGGCCGGAATAGGc    >  1:215582/1‑140 (MQ=255)
                                                                                                                                   tGGCTGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAGGCCGGAATAGGCtt  >  1:181444/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                       
ATTTCAGTCCCTTCAGTTTCGTGTTCAAATCCAGGGAAATGGTGGTCCCAGGATTGCAGCGAGCGTAAATAACTTACTTGCGGACTGTTTTTATCGCCGAAGTTTTCACCAGACAGCAGCATCGGGATTCCTGGCGGATACGGGATAACTGAGTTTGCCGCGATGCGTCCTGGCAGATTTTCAATGGATACCAGTTCGACATTGTTGTCGACAATCGCGTTGTACGCTTCACGCGGGGTGACTTCCGCCACCGGCAGGCCGGAATAGGCTT  >  NC_000913/4338294‑4338564

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A